Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1393 ATGTCACAACAAGACTACCAACAAGCGGCGGCGGCAGGTTTCTTCACGCCTTTCTGCAATGGCTATGATAGATCCTCCACAACCCACCAAGACTCTCAACAACACTACCAACACATAGCCCACCAGATCCGTAAGGAGAAGCTCCGCCTCCAAGGCTTCGACCCACAGCCACATCCACCGTCGTTAGTCGGAATTGACGATGACAACGACGACCAATCCGCTGTCCACCATGTCTACGACTCCACCGGAATTTTATCCGAAATGTTCAATTTCCCTCCGCCTCCACCACCACCGCCACCGCAAACCGACTGGTATGGTAACCGGCAAACAATCAACGCGGCCGACTCGGCTGTCGCCATGCAGCTTTTTCTAATGAACCCGAATCCCCGGTCGCCGTCTCCGCCACCGCCACCACCTTCCTCAACACTCCACATGCTTCTTCCAAACCCATCTTCAGGAGGGTCTTTTGGACAATTCACATGGGGGGTGGTTCCAGAGCAAGAAACAGGTGACCATTCTTCATCAAACCCTAACGAAGGCCGTCTTTCGTTGTCATTGTCATCGTCTTTGGAAGCTGCAAAAGCCGAGGAATTGAGAATGGGTGACAGCACCAACGGGTTACTTTATCAACACCACCATCACCCTCAACATGTACATGTCGGATCAATTGGGTCCTCCAATCCACTTGGAGTCGTCAACTTATTGAGAAACTCAAAATATGTTAAAGCTGCACAAGAATTATTAGAGGAATTTTGTAGCGTTGGAAGAGGTCAGTTTAAGAAAAATTATAATCATGATAACAAATTTAATAATAAATCAAATTTGCCCTCCAACTCCAATTCCCACGGCGGTGGCGGCGACGGTACCGGAGTTTCTTCCTCTTCGACAAAGGATCATCAGCCAGCTTTGTCAGCAGCTGATAGGATTGACCATCAAAGAAGGAAGGTCAAACTGTTATCTATGCTTGATGAGGTGGATCGAAGATACAACCATTACTGCGAGCAGATGCAAATGGTAGTAAATTCATTCGACGAGGTGATGGGGTTTGGAGCGGCGGTGCCATACACATCGTTGGCGCAAAAGGCGATGTCCAGACATTTCAGGTGTCTAAAGGACGTTATATCAGCGCAGTTGAAGCATAGTTGCGAGATGTTGGGAGAGAAAGATGGAGGAGTAAGTGGAAGAGCCTCAGGAATAACAAAGGGTGAGACTCCAAGGCTAAAGCTCTTGGAGCAAAGCCTTAGGCAGCAACGAGCTTTCCACCAAATGGGCATTATGGAACAAGAAGCTTGGCGTCCCCAACGCGGTTTACCCGAACGCTCTGTCAACATCTTGCGAGCTTGGCTCTTCGAGCATTTCCTTCATCCGTACCCTAGCGATGCTGATAAACATTTGTTGGCTAGGCAGACTGGTTTGTCAAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAAGCCAAACAAGATGATGATGATGATGATAATACGGATGAAGACACACAAACCAACTCTCAACAAATTACCACTAATAATAATCCTCTTTCACAAACTCCAACGCCGCCTACTTCCTCCGCCGCACCACCACCCCCCTCCTCCTCCGCCGCCTCTCCACCCAAAATACCCGATCACCCTTCACCCTTCTCCGCCGCCGCTACCCGCTGCTTTCCGGCTACCCATTATGACTCAGACCTCCACGACACGTGTCGTCGCCTCACCGTTCTCCCTGCACCTGATCTTCAATTCGGGACCACAACCTCTTCTGCCACGTCTGACATCCCCAGCCCCACCACCCTCATAAGGTTCGGGACCACCGCCGGTGACGTGTCGCTCACACTAGGTTTACGCCATGCCGGAAATATCCCCGATAAAACCTCTTCTTTCTCCCTCAGATCCGAGTTTGGAGGCTGTTAG 1956 49.95 MSQQDYQQAAAAGFFTPFCNGYDRSSTTHQDSQQHYQHIAHQIRKEKLRLQGFDPQPHPPSLVGIDDDNDDQSAVHHVYDSTGILSEMFNFPPPPPPPPPQTDWYGNRQTINAADSAVAMQLFLMNPNPRSPSPPPPPPSSTLHMLLPNPSSGGSFGQFTWGVVPEQETGDHSSSNPNEGRLSLSLSSSLEAAKAEELRMGDSTNGLLYQHHHHPQHVHVGSIGSSNPLGVVNLLRNSKYVKAAQELLEEFCSVGRGQFKKNYNHDNKFNNKSNLPSNSNSHGGGGDGTGVSSSSTKDHQPALSAADRIDHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDEVMGFGAAVPYTSLAQKAMSRHFRCLKDVISAQLKHSCEMLGEKDGGVSGRASGITKGETPRLKLLEQSLRQQRAFHQMGIMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQEAKQDDDDDDNTDEDTQTNSQQITTNNNPLSQTPTPPTSSAAPPPPSSSAASPPKIPDHPSPFSAAATRCFPATHYDSDLHDTCRRLTVLPAPDLQFGTTTSSATSDIPSPTTLIRFGTTAGDVSLTLGLRHAGNIPDKTSSFSLRSEFGGC 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26181962 26187828 - CcPI632755_02g013930.1 Cco02g1393 172150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1393 651 MobiDBLite consensus disorder prediction 265 309 - -
Cco02g1393 651 MobiDBLite consensus disorder prediction 535 559 - -
Cco02g1393 651 MobiDBLite consensus disorder prediction 125 149 - -
Cco02g1393 651 MobiDBLite consensus disorder prediction 128 144 - -
Cco02g1393 651 ProSiteProfiles 'Homeobox' domain profile. 428 491 IPR001356 GO:0003677(InterPro)
Cco02g1393 651 MobiDBLite consensus disorder prediction 515 534 - -
Cco02g1393 651 CDD homeodomain 431 492 IPR001356 GO:0003677(InterPro)
Cco02g1393 651 MobiDBLite consensus disorder prediction 499 562 - -
Cco02g1393 651 MobiDBLite consensus disorder prediction 268 301 - -
Cco02g1393 651 MobiDBLite consensus disorder prediction 500 514 - -
Cco02g1393 651 SUPERFAMILY Homeodomain-like 432 498 IPR009057 -
Cco02g1393 651 Gene3D - 434 496 - -
Cco02g1393 651 SMART prehox3 229 376 IPR006563 -
Cco02g1393 651 Pfam Homeobox KN domain 448 487 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco02g1393 651 SMART HOX_1 431 495 IPR001356 GO:0003677(InterPro)
Cco02g1393 651 FunFam BEL1-like homeodomain protein 4 434 496 - -
Cco02g1393 651 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 172 519 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco02g1393 651 Pfam Associated with HOX 235 375 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0252 Cco-Chr1:2370519 Cco02g1393 Cco-Chr2:26181962 1.10E-77 dispersed
Cco02g1393 Cco-Chr2:26181962 Cco04g1384 Cco-Chr4:29223308 1.40E-131 dispersed
Cco02g1393 Cco-Chr2:26181962 Cco02g2400 Cco-Chr2:36351654 8.90E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58777 PF07526 POX 1.50E-51 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1393 - - - 0.0