Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1441 ATGTCATCATCAAATTCACCATGTGCGGCGTGCAAAATCCAGAGAAGAAAATGCACACAAGAATGCGTATTTGCACCATACTTCCCACCGGATCAGCCACAGAAATTCGCCAACGTCCACAAAGTATTCGGTGCAAGTAACGTAGCCAAACTTTTAAACGAACTGAACGCAACACAACGTGAAGACGCCGTTAATTCATTAGCCTACGAAGCCGAGTTCCGTTTACGTGACCCAGTCTACGGTTGCGTTGGCTTAATCTCCGTCCTTCAACACAAACTCAAACAAATGCAAAGCGATCTCTACAATGCTAAAAAAGAACTGGCCTCTTATATTGGTCCTCAAGCCATGCTCCCAATTCTCCAACCACAACCACAACCACAACCACAACCACCCACACCAACCCCTTCCTCCTCCGCTTTACTTCCCTACAATATCTCCCCCATGTTAGCCATTCCCCCTTCCGCCGCCCCTGGCTCTTCCCAACAGATGCTCATTCCTCCTCAACACCAAATGCAGCAGCAGCAGCAGTTATTCGAGGCTCAACAATTGGCTGCGGCTGTAGCCGCCAGAGAGCAACAAGAAATGTTCAGAGCTTATGAGCATAAACAATCCCACCACCACCACCACCAACAACAACAACGCCAACATGAGCTTTTGAGATTCAATGGGTTTGATGCTGGTGGTGGATTTAATAATCAAATGAATTCTTCTCCCTCTAATTTGACTTTGGGGACTTTTGTTGATAACACCTACCAAATTCAAACACAACCTGAACATTCACATTCGCATTCCCATTCGCATTCGCATTCGCATTCCCCGCTTCAAGTACAGCTGTTTCTTCAACCTCAACAAACTCAGCATGATCAACCACAGCACCCTCATCCACATCAATCCCACAAGCCTGAAACTACTCCTGCTGATGATGGTAGGAATAATAATATTAACATTGGCCCCTCTTGTTAA 963 46.11 MSSSNSPCAACKIQRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYIGPQAMLPILQPQPQPQPQPPTPTPSSSALLPYNISPMLAIPPSAAPGSSQQMLIPPQHQMQQQQQLFEAQQLAAAVAAREQQEMFRAYEHKQSHHHHHQQQQRQHELLRFNGFDAGGGFNNQMNSSPSNLTLGTFVDNTYQIQTQPEHSHSHSHSHSHSHSPLQVQLFLQPQQTQHDQPQHPHPHQSHKPETTPADDGRNNNINIGPSC 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 26802056 26803018 + CcPI632755_02g014410.1 Cco02g1441 172198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1441 320 Coils Coil 86 106 - -
Cco02g1441 320 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cco02g1441 320 MobiDBLite consensus disorder prediction 119 137 - -
Cco02g1441 320 MobiDBLite consensus disorder prediction 292 306 - -
Cco02g1441 320 MobiDBLite consensus disorder prediction 283 320 - -
Cco02g1441 320 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cco02g1441 320 MobiDBLite consensus disorder prediction 118 141 - -
Cco02g1441 320 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 205 - -
Cco02g1441 320 MobiDBLite consensus disorder prediction 255 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1441 Cco-Chr2:26802056 Cco11g1139 Cco-Chr11:22185943 2.80E-45 dispersed
Cco02g1441 Cco-Chr2:26802056 Cco09g2134 Cco-Chr9:35716222 5.20E-39 transposed
Cco02g1441 Cco-Chr2:26802056 Cco10g1378 Cco-Chr10:26834204 5.20E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58786 PF03195 LOB 2.50E-41 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1441 - - - 0.0