Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1474 ATGAGAGCTTCAAATCCCTATTTTCTCATCTGGATTCTTTGTGCTTTGTGTTTATCATCATCTCTCTCATCAGAATTCACTCCCGATGATAATTTTCTGATCGATTGTGGATCATCCTCCAATAGTACAGTGGAAGGTCGTTTATTTCTATCTGATGATTCCAACCCAAATGGGAAATCTCTTTCCACTACAAGCAATGTATCTAGTTCATCTCCATTAGACTTGTTCTCACCTCTATTTAGAACTGCAAAAGTATTTGAAACAACTTCCCAATACAACTTCAAAATTAAGAAACAGGGCAGGCACTGGATCCGCCTATACTTTTACCCTTTTGTTTCTGGGAACTTCAGCCTGAGTTTAGCCAAATTCTCAGTTTCTGCCCAAAATATCACCCTTCTCAAAGAGTTTCAAATCGACAGTGGCTCGGTAATCAAGGAATATTCTTTGAATGTCACTTCCAGTAATCTTGTTCTTACATTTACTCCCATGGTGAATTCATTTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTAATGAACTGATTCCCTCGACTATCACTAGTGTTGAGAAGGTTGAAATTAGTTTGGAGAACAGGGTATTGGAGACAGTTGCTAGAGTGAATATGGGCAATGAAACCGTGTTGCCGAATGACGATATTCTCTCACGCCTTTGGGTTGCAGATGGTCCATTCTTGATGCATAATGATCAGGTTGTCGTCGGAAAGTTTGTGTCAAATCTCACAAAAGTGAATATGACAAGAGGTTCTGAAATTAAGGCTCCTCGTTTTGTGTATGGAACAGCAACTCGGTTAGGAGCTGATGTGGATGTGAATGCTAATGTCAATGTATCGTGGTCATTCGACATTGATCCGGGATATGAATATCTGATTCGTTATCATTTCTGTGATATTATTGATCTTTTTCTTGGACCAATTTCATTCAATGTTTATGTTAACTCGTGGAAGGTTAAAGATCATCTTGATCTTAGTAGTCTCACTTTACATATCCCAGGTGCACCCTATGTCCTGGACACTATAGCCAGTCCAATTGATAGCTCTAAGTTCAAAATAAGTGTTGGCCCTTCCAATTTTCATGAGTATTCAGCTGCCATTCTTAACGGGCTCGAGATCATGAAAATTAGTGATTCTCGGAGGAGCCTCGATGAACCCTCTGGTTTACACTCAAAGAAAGGTTCCAATGTTAAAGTTGGTCTTATAGCAGGCTTGGTAGCTGGACTGCTTGTTCTTGTTGTTTTGGCCACTCTTGTCATTGTGCTGTGCAGAAGAAGGAGATCCGCGCTTGTTCGTCACTTGAAGGAAGAGGAAAATTTTGGTGCGAATGGTAGAGAAAGCAACTACATCATTGGATCTGTTGCCTTTTCGAACTCAAAAATCAGTTATCGATATCCTCTTGCAGCTATTCAGGAAGCTACAGGTCATTTTAGTGAAAGTTTAGTCATTGGCCTTGGTGGGTTTGGGAAAGTTTACAAGGGAATGTTGAGGGACAACACAGAAGTGGCAGTGAAAAGAGGAACTTCTAAATCCCAGCAGGGTCTTGCAGAGTTTCAAACTGAAATTGAGATGTTATCCCAGTTTCGCCACCGTCATTTAGTTTCTCTGATTGGGTACTGCGACGAGCAAAACGAGATGATTATAATTTATGAGTACATGGAAAAAGGGACCCTCAAGGACCATTTGTATGGATCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGATATTTGCATTGGCTCAGCTAGAGGACTTCATTATCTTCACACTGGCTCCACAAAGGCAATCATACACAGAGATGTCAAAACTGCAAACATTCTTCTTGATCAAAACTACATGGCCAAAGTTGCAGACTTCGGACTCTCGAAGATTGGCCCCGAATTGGACAAGACTCATGTCAGTACAGCAGTGAAAGGAAGCTTCGGCTATCTCGATCCCGAGTATTTAACGACGCAGCAACTGACCGAGAAATCAGACGTGTACTCTTTTGGGGTGGTTATGTTTGAAGTCCTTTGTGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAAGTGAATTTAATTGAATGGGTAATGAGGAGGAAGGACAGAGATCAATTGGAGGCGATAGTAGACGCTCGCATTGTTGAGCAAATCAAGCTAGAATCTCTGAAAAAATATGTAGAGACGGCCGAGAAATGCTTGGCAGAATGTGGAATGGATCGTCCGACGATGGGAAACGTTCTATGGAATCTGGAGTGTGCTCTCCAGCTCCAAGGGGACGAAAAATCTCGTCATGGAAAGGAATCATCCTCACAAGCTGATCTTTCCAACCACTGGGAGGCGAGCGTATCAACGACTCAATTCAGCACGGGAAGTGCGGTCGATATCGCGGGTATTTCGATGAGTAAGGTATTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2448 41.95 MRASNPYFLIWILCALCLSSSLSSEFTPDDNFLIDCGSSSNSTVEGRLFLSDDSNPNGKSLSTTSNVSSSSPLDLFSPLFRTAKVFETTSQYNFKIKKQGRHWIRLYFYPFVSGNFSLSLAKFSVSAQNITLLKEFQIDSGSVIKEYSLNVTSSNLVLTFTPMVNSFAFINALEVVSVPNELIPSTITSVEKVEISLENRVLETVARVNMGNETVLPNDDILSRLWVADGPFLMHNDQVVVGKFVSNLTKVNMTRGSEIKAPRFVYGTATRLGADVDVNANVNVSWSFDIDPGYEYLIRYHFCDIIDLFLGPISFNVYVNSWKVKDHLDLSSLTLHIPGAPYVLDTIASPIDSSKFKISVGPSNFHEYSAAILNGLEIMKISDSRRSLDEPSGLHSKKGSNVKVGLIAGLVAGLLVLVVLATLVIVLCRRRRSALVRHLKEEENFGANGRESNYIIGSVAFSNSKISYRYPLAAIQEATGHFSESLVIGLGGFGKVYKGMLRDNTEVAVKRGTSKSQQGLAEFQTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGTLKDHLYGSELPSLSWKQRLDICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKIGPELDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMRRKDRDQLEAIVDARIVEQIKLESLKKYVETAEKCLAECGMDRPTMGNVLWNLECALQLQGDEKSRHGKESSSQADLSNHWEASVSTTQFSTGSAVDIAGISMSKVFAQMVREDMR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27248833 27251280 + CcPI632755_02g014740.1 Cco02g1474 172231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1474 815 SUPERFAMILY Protein kinase-like (PK-like) 464 752 IPR011009 -
Cco02g1474 815 Gene3D - 31 179 - -
Cco02g1474 815 Gene3D - 201 382 - -
Cco02g1474 815 ProSiteProfiles Protein kinase domain profile. 482 756 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1474 815 CDD STKc_IRAK 488 753 - -
Cco02g1474 815 FunFam Receptor-like protein kinase FERONIA 558 772 - -
Cco02g1474 815 Pfam Protein tyrosine and serine/threonine kinase 487 745 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1474 815 Gene3D Transferase(Phosphotransferase) domain 1 558 780 - -
Cco02g1474 815 PANTHER OS07G0166700 PROTEIN 470 759 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco02g1474 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1474 815 FunFam receptor-like protein kinase FERONIA 448 557 - -
Cco02g1474 815 FunFam Putative receptor-like protein kinase 31 179 - -
Cco02g1474 815 Pfam Malectin-like domain 34 381 IPR024788 -
Cco02g1474 815 SMART serkin_6 482 755 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1474 815 Gene3D Phosphorylase Kinase; domain 1 448 557 - -
Cco02g1474 815 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1474 Cco-Chr2:27248833 Cco02g2203 Cco-Chr2:34634429 1.80E-213 dispersed
Cco11g1970 Cco-Chr11:32175938 Cco02g1474 Cco-Chr2:27248833 6.60E-56 dispersed
Cco02g1474 Cco-Chr2:27248833 Cco05g0994 Cco-Chr5:8762956 3.50E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86574 PF12819 Malectin_like 2.40E-31 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1474 - - - 0.0