Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1482 ATGGTATCTGAAACTTTGATGAAGATTGTATCACCTTGCTGGAAACCCTTGGTTGAAGGCGAAAATTCCAGTAGAGGTGGGGATGCAAGTGGTCGTGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGGGAATTCTCAATGGCAGTTATTCAGGCAAATAATTTGTTGGAAGATCGTAGCCAACTTGAGTCAGGACCACTGAGCTCATTTGAATCGGGTCCCGTTGGAACGTTTGTTGGAATTTATGATGGCCATGGAGGACCAGAAGCTGCAGAATTCATAAATGATCATCTTTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGAAAATCGGGGGGTATCTGCTGAAATTATTAATAAAGCATTCTTGGAGACGGAGGAGGAATTTTTGTCTCTTGTAAAGAAACAATGGCTTATGAAGCCTCAAATTGCTTCGGTTGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGATTTGAAAAAACTCATAAAGAGGTTAAAGCCATCCAATTGTCATCTGAGCACAATGCTAGTATTGAATCTGTGAGAGAGGAGCTGCACTCGTTGCATCCCAATGATCCACAGATTGTGGTGCTAAAGCACAAGGTGTGGCGCGTGAAGGGCGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACAGAGTTCAACCAAGAGCCTCTTTTGCCGAAGTTCAGACTACCAGAACCATTCCACAAGCCAATACTTAAAGCCGAGCCTGCTATTGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACATCGTCCATAGTTGTCCACGTAACGGGGTTGCTAGGAAACTCGTTAAAGCCGCTCTTCATGAAGCTGCAAAAAAAAGAGAAATGAGATACACAGACTTGAAGAAGATTGACCGCGGGGTAAGGAGGCATTTTCACGACGACATCACTGTTATAGTTTTGTTCCTCGATTCGCATCTGATTAGTCGCAGTCCAAGCTACGGACCAATGCTTTCAATCAGAGGAGGTTCTGGTATCCTCGCTAGATCATAG 1170 43.16 MVSETLMKIVSPCWKPLVEGENSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANNLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDHLFNNMKTFHGAEFIPENRGVSAEIINKAFLETEEEFLSLVKKQWLMKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRFEKTHKEVKAIQLSSEHNASIESVREELHSLHPNDPQIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNQEPLLPKFRLPEPFHKPILKAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDIVHSCPRNGVARKLVKAALHEAAKKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSYGPMLSIRGGSGILARS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27321987 27325683 + CcPI632755_02g014820.1 Cco02g1482 172239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1482 389 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
Cco02g1482 389 FunFam Phosphatase 2C family protein 38 372 - -
Cco02g1482 389 SUPERFAMILY PP2C-like 58 363 IPR036457 -
Cco02g1482 389 CDD PP2Cc 50 362 IPR001932 -
Cco02g1482 389 PANTHER PROTEIN PHOSPHATASE 42 361 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco02g1482 389 Gene3D - 39 370 IPR036457 -
Cco02g1482 389 ProSiteProfiles PPM-type phosphatase domain profile. 49 362 IPR001932 -
Cco02g1482 389 SMART PP2C_4 41 360 IPR001932 -
Cco02g1482 389 Pfam Protein phosphatase 2C 81 331 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1482 Cco-Chr2:27321987 Cco04g1830 Cco-Chr4:33120802 1.20E-141 dispersed
Cco10g2062 Cco-Chr10:34000408 Cco02g1482 Cco-Chr2:27321987 6.10E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1482 K01102 - csv:101220760 753.821