Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1483 ATGGCGACTTCGACACTGGGCGGCACCGTAGGCTTCTCCCAGCCCTCGTCTTCCTCGCATATCTCAGTTTATTGCATTCCCTTTTCAACCAGCAGATTCAGTTTCTCGAGGACCATTCTTTCTCCTCTTAAGCTTGAAAAACCACCACCTGGAAGAAGAGCCAGAGCTGTAATTGCTGTGAAAATGGCTGCTGAGGCTTTTCAGGAAGTTTTTCCTCCAGCCCTCACTTCAGCTTCAGAACCACCTCCTCTCTTTGATGGAACAACGAGGCTTTACATATCTTATACATGCCCTTATGCGCAGCGTGTGTGGATTACTCGGAATTGTAAGGGTTTGCAGAATAAGATACAATTGGTTCCAATAAATCTACAGGATAGGCCATCTTGGTACATGGAAAAAGTTTACCCACCTAACAAGGTGCCAGCTCTTGAACATAATAATGAGGTCAAAGGAGAGAGTCTTGACTTAATTAAATATATTGACAGCAATTTTGAAGGGCCTTCATTATTTCCTGATGATCCGGGAAAGCGAGAGTTTGCTGAAGAGCTGATAGACTACGTGAACTCTTTCACGAAATCTGTGGTTTCTTCATTTAAAGGAGATGGAAATGAAGCTGATGTGGCATTTGACTACATCGAATCTGCTCTTTCAAAATATGGAGATGGCCCGTTTTTTCTAGGCCAGTTTAGTCTGGTGGATATAGCTTATGCTCCGTTTATTGAAAGGTTTCAGCCGTTCTTATTAGAAGTAAAAACATATGACATCACTGCTGGCAGGCCAAAACTAGCAGCTTGGATTGAGGAGATGAACAAGATCGAAGGGTACCGAAAAACAAGGGGCGATCCACGGGAACATGTTGATAGCTATAAGAAGCGATTCTTGAGCCGTTTGTGA 894 43.51 MATSTLGGTVGFSQPSSSSHISVYCIPFSTSRFSFSRTILSPLKLEKPPPGRRARAVIAVKMAAEAFQEVFPPALTSASEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQNKIQLVPINLQDRPSWYMEKVYPPNKVPALEHNNEVKGESLDLIKYIDSNFEGPSLFPDDPGKREFAEELIDYVNSFTKSVVSSFKGDGNEADVAFDYIESALSKYGDGPFFLGQFSLVDIAYAPFIERFQPFLLEVKTYDITAGRPKLAAWIEEMNKIEGYRKTRGDPREHVDSYKKRFLSRL 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27328043 27332822 + CcPI632755_02g014830.1 Cco02g1483 172240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1483 297 PANTHER GLUTATHIONE S-TRANSFERASE L1 62 296 IPR044629 GO:0004364(PANTHER)|GO:0004364(InterPro)|GO:0010731(PANTHER)
Cco02g1483 297 Pfam Glutathione S-transferase, N-terminal domain 91 167 IPR004045 -
Cco02g1483 297 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 87 168 IPR004045 -
Cco02g1483 297 SFLD Main (cytGST) 90 271 - -
Cco02g1483 297 SFLD Glutathione Transferase (cytosolic) 90 271 IPR040079 -
Cco02g1483 297 CDD GST_C_Lambda 173 290 - -
Cco02g1483 297 SUPERFAMILY GST C-terminal domain-like 164 293 IPR036282 -
Cco02g1483 297 Gene3D Glutaredoxin 62 165 - -
Cco02g1483 297 FunFam Glutathione S-transferase L2, chloroplastic 62 165 - -
Cco02g1483 297 Pfam Glutathione S-transferase, C-terminal domain 208 267 - -
Cco02g1483 297 Gene3D - 166 297 - -
Cco02g1483 297 SUPERFAMILY Thioredoxin-like 78 169 IPR036249 -
Cco02g1483 297 FunFam Lambda class glutathione S-transferase 166 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1483 Cco-Chr2:27328043 Cco10g2060 Cco-Chr10:33991514 2.10E-87 dispersed
Cco10g2059 Cco-Chr10:33967419 Cco02g1483 Cco-Chr2:27328043 4.80E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1483 K00799 - csv:101220995 533.487