Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1486 ATGGGATGGTTTCTCTGTTCTGGAAGTTCGAATAAGAAGGAAAAACATCAGCAGCGGCAGGTTCAGAAGAAGGACGATGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGCCGACATTTAATGGGAAGAACGAGGCTCTGAAAGATGGAGGTTCTGATCAAATTGCAGCACAAACAATTACATTCTCATTCCGGGAGTTGGCAGCTGCAACAAAGTATTTTAGAGCCGACTGTCTTTTGGGTGAAGGAGGTTTTGGTCAAGTTTATAAAGGACGATTGGAGAGCATAAATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAATTTCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCACCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAAAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATTTACATGATCTCCCACCTGATAAAAGACGACTTGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTGCATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTTGGTGAAGATTACCATCCTAAGCTTTCTGATTTTGGCTTGGCAAAATTAGGCCCCGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACATATGGATACTGTGCTCCTGAGTATGCAATGACAGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTTGTTCTACTCGAAATTATTACTGGGAGAAAAGCTATTGACAATTCAAGAGCTGCAGGGGAACATAATTTGGTGGCATGGGCTCAACCCTTATTTAAAGACAGAAGGAAATTTTCGCAGATGGCCGATCCATTACTCCAAGGACAATACCCAGTCAGAGGCTTATATCAAGCTCTTGCAGTAGCTGCAATGTGTGTTCAGGAACAGCCTCATATGCGACCCCTTATTGCTGATGTTGTCACAGCCCTTTCATATCTTGCTTCCCAAAAATACAACCCCGAAACTCAGCCAGTTCAAAGCGCTCGCAATAGCTCCTCTACTCCCAGTTCAACAATCGTAGAAACGAGAAATCGAATTTTGAATTTTGGAGGAGCTGGTTGCCTTCTGCTTTTGACTTCCCAGGATCAGCAGGGCCACATTAACTTGCACGATAGAACCAAAGGAAAGATCACTGTTTTTTGCGTTCTTCTTCTTCCTCGCTCTGCTCCGCCTGTCGCCGCCCTAAAATCGCGAACCATAATGGACCGATTGACTTCGAATTTGCTTGATGAAGCTATAGGTTTTGATGATCCCACTAAGCCCTCCCCTCTGATCGGCCGTCTGTTGCTCGTCGAGGATTGCGTTGAAACAAGCGGTGCTTTTGTTCTTCATCACCTTCTCAAGCGCGCCTTTTCTTCTCGTCACTCGTCCAATGCCGTCATCTTCATTGCATTCTCTCAGTCCTTCGTCCATTACGACCGCGTGCTCAGGAAACTGGGGTGTAATTTAGCTGCTCAAAGGGACAGCGGTAGGTTCGTTTTCTTTGACATGCTTACACTGGGCTGTTCAGATAGAAGTGGAAAGGAAACTGATGAAGGTGTTCTTGTTGGGCTGTACTGCAAAATTCAAAGAGCTGTTAATGCTTTAATTCAAGAGAACAAAGGGCATGTCACCATTGTGATTGATGATATATCTCTTTTGGAGGTTGCTGCCAATGGTTCTATAAATCACGTCTTAGACTTCCTTCATTATTGCCACACTTTAACATCAGAAATTGGTTTTTCCATAATTGCACTTAATCACGAAGATGTTTACGTGGACATCGAAAGGCCACTGATTCTACAGATGGAATACCTTGCTGACGTTTTGATAAAAGTAGGACCACTGGCCACAGGTATAGCAAAGGACGTTCATGGGCAGCTGACAGTTTTGAACAAGCCAGTTGAAGGTCTGCAAGACAAGTTGAGAAACAGAGTGCATAATTTTCACTTTTACATCAAGGAAAATGGTACTGAATTTTTTTATTCTGGAAGCAGAGCTTGA 2103 43.22 MGWFLCSGSSNKKEKHQQRQVQKKDDDPIPSTSEKLMVKPTFNGKNEALKDGGSDQIAAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKRRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAQPLFKDRRKFSQMADPLLQGQYPVRGLYQALAVAAMCVQEQPHMRPLIADVVTALSYLASQKYNPETQPVQSARNSSSTPSSTIVETRNRILNFGGAGCLLLLTSQDQQGHINLHDRTKGKITVFCVLLLPRSAPPVAALKSRTIMDRLTSNLLDEAIGFDDPTKPSPLIGRLLLVEDCVETSGAFVLHHLLKRAFSSRHSSNAVIFIAFSQSFVHYDRVLRKLGCNLAAQRDSGRFVFFDMLTLGCSDRSGKETDEGVLVGLYCKIQRAVNALIQENKGHVTIVIDDISLLEVAANGSINHVLDFLHYCHTLTSEIGFSIIALNHEDVYVDIERPLILQMEYLADVLIKVGPLATGIAKDVHGQLTVLNKPVEGLQDKLRNRVHNFHFYIKENGTEFFYSGSRA 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27375699 27387640 + CcPI632755_02g014860.1 Cco02g1486 172243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1486 700 Gene3D Transferase(Phosphotransferase) domain 1 153 375 - -
Cco02g1486 700 Pfam Elongation complex protein 6 465 687 IPR018627 GO:0002098(InterPro)|GO:0033588(InterPro)
Cco02g1486 700 Pfam Protein tyrosine and serine/threonine kinase 80 296 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1486 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1486 700 Gene3D - 459 696 IPR027417 -
Cco02g1486 700 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524(InterPro)
Cco02g1486 700 CDD STKc_IRAK 82 350 - -
Cco02g1486 700 CDD Elp6 467 695 - -
Cco02g1486 700 PANTHER OS07G0668900 PROTEIN 14 374 - -
Cco02g1486 700 SUPERFAMILY Protein kinase-like (PK-like) 64 380 IPR011009 -
Cco02g1486 700 Gene3D Phosphorylase Kinase; domain 1 49 152 - -
Cco02g1486 700 FunFam Serine/threonine-protein kinase PBS1 153 368 - -
Cco02g1486 700 FunFam Serine/threonine-protein kinase PBS1 47 152 - -
Cco02g1486 700 MobiDBLite consensus disorder prediction 1 35 - -
Cco02g1486 700 SMART serkin_6 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1486 700 MobiDBLite consensus disorder prediction 12 32 - -
Cco02g1486 700 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1486 Cco-Chr2:27375699 Cco05g0690 Cco-Chr5:5660093 2.60E-160 dispersed
Cco04g0611 Cco-Chr4:19956790 Cco02g1486 Cco-Chr2:27375699 6.70E-72 transposed
Cco04g0612 Cco-Chr4:19958233 Cco02g1486 Cco-Chr2:27375699 1.40E-30 transposed
Cco10g2058 Cco-Chr10:33962794 Cco02g1486 Cco-Chr2:27375699 2.20E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86575 PF07714 PK_Tyr_Ser-Thr 9.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1486 - - - 0.0