Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1495 ATGATGTTGGATCTCAACGATTCGATTATGAACCGTGACGAAACGACGGCGGAGCGGATCGTAATGGAAGATTCAGAGACTTCAAATTCCTCCGTTGTTAATGCTGCCGACGAGGTTTCCAATAGCAGAGATGAAGATTCCTCTGTTTTAATCTTCGATATTCTCAAAAGGGAAAGTTCCGGCGGCGGCAGCGGCGGCGGCGCGTCCCCGGGATTGGTGACTCAGACACTTTTTCCGGTGGTTGGAGGATGGGGGGATTCTGGGTCTCCAGTGCCCAGAACCCATTGGTTGAACTTGTCGTCGACGGCGGATTCCGGCGGCGGCGGTGGACAGCCGGAGTTGAGAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGTTCCCGGAGCTCGCAGTACCGAGGAGTTACCTTTTACCGGCGAACTGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTGGGTGGGTTTGACACAGCCCATGCTGCAGCAAGGGCTTATGATCGAGCAGCAATAAAGTTTAGAGGAGTCGATGCAGACATAAACTTCAACATAAGTGATTACGATGAAGATATGAAACACATGAAGAATCTAAGCAAAGAAGAGTTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAACTCAGAGGACTGTCTCTTCAAAAATATGGAACATGGGAAAATCAAATGAGCCAAATTATTGGGAAGAATGGAATTGAGCAGAGGTCTTACAAAGGGGAAACAATGGTGGATGCAAGCAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTTAGTAGTTCTCCTCAAAAACTCAACATTGAGAGACCAAAGAATGAAAACAATGGTTATGCATGTGGTGTGGCTGGCCAACAACCTCATATTCCTCCTTCTATGTGGTCTAGTTTTTACTCTGGTTTTGTAGCAGATAATGAGGAAAGAGGGAGAGAAAAGAGAAACGACTCAACGAAGAGCCCTACGAGTTGGGGATGGCAAATGCCAACATCGACTTCGATGTCGATATCAATGCCAATGCAAATTCAAGAAAATATGAGTGGAAAAAGCAATTACAAGAATAATAATAACAATAACAATAATAATAATATGAGTAGTAATGGAATAATAGCAAGAGAAGAAGCTCATGTTTCCAAGATTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATGCCCAAAACAACACTGCCCTCCACAGTACTCACTGCCCCAATATTTCTTGA 1323 44.9 MMLDLNDSIMNRDETTAERIVMEDSETSNSSVVNAADEVSNSRDEDSSVLIFDILKRESSGGGSGGGASPGLVTQTLFPVVGGWGDSGSPVPRTHWLNLSSTADSGGGGGQPELRIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNISDYDEDMKHMKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGTWENQMSQIIGKNGIEQRSYKGETMVDASNGGNGHNLDLSIGGIFNYHFSSSPQKLNIERPKNENNGYACGVAGQQPHIPPSMWSSFYSGFVADNEERGREKRNDSTKSPTSWGWQMPTSTSMSISMPMQIQENMSGKSNYKNNNNNNNNNNMSSNGIIAREEAHVSKIAASSGFSSSSNFGSLYAQNNTALHSTHCPNIS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27498678 27502491 + CcPI632755_02g014950.1 Cco02g1495 172252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1495 440 SUPERFAMILY DNA-binding domain 136 195 IPR016177 GO:0003677(InterPro)
Cco02g1495 440 CDD AP2 137 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1495 440 MobiDBLite consensus disorder prediction 374 394 - -
Cco02g1495 440 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 27 260 - -
Cco02g1495 440 SMART rav1_2 137 199 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1495 440 MobiDBLite consensus disorder prediction 22 38 - -
Cco02g1495 440 MobiDBLite consensus disorder prediction 22 41 - -
Cco02g1495 440 MobiDBLite consensus disorder prediction 92 112 - -
Cco02g1495 440 MobiDBLite consensus disorder prediction 335 358 - -
Cco02g1495 440 MobiDBLite consensus disorder prediction 93 107 - -
Cco02g1495 440 Pfam AP2 domain 137 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1495 440 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1495 440 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g1495 440 MobiDBLite consensus disorder prediction 119 138 - -
Cco02g1495 440 FunFam AP2-like ethylene-responsive transcription factor 136 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1495 Cco-Chr2:27498678 Cco02g2225 Cco-Chr2:34853474 3.00E-69 dispersed
Cco10g2053 Cco-Chr10:33922839 Cco02g1495 Cco-Chr2:27498678 2.70E-69 wgd
Cco02g1495 Cco-Chr2:27498678 Cco04g1079 Cco-Chr4:26261938 2.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58788 PF00847 AP2 6.10E-10 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1495 K09284 - csv:101204131 706.057