Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1497 ATGACGAGCTTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGACAGGCACATGAAAAGGCTGAGTCAATCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTCGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCGTATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTTGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCGTTCCCGGTTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAAACTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1668 45.5 MTSFRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDRILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPVARQIQKFLLFPSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDETAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27515262 27528816 + CcPI632755_02g014970.1 Cco02g1497 172254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1497 555 MobiDBLite consensus disorder prediction 379 411 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 481 499 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 443 461 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 462 480 - -
Cco02g1497 555 ProSitePatterns NF-YB/HAP3 subunit signature. 446 462 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g1497 555 Gene3D Histone, subunit A 405 533 IPR009072 GO:0046982(InterPro)
Cco02g1497 555 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 415 479 IPR003958 -
Cco02g1497 555 Gene3D - 171 367 IPR043132 -
Cco02g1497 555 MobiDBLite consensus disorder prediction 502 527 - -
Cco02g1497 555 MobiDBLite consensus disorder prediction 395 409 - -
Cco02g1497 555 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cco02g1497 555 Gene3D - 30 89 IPR043131 -
Cco02g1497 555 FunFam Nuclear factor Y, subunit B1 405 504 - -
Cco02g1497 555 SUPERFAMILY Histone-fold 412 513 IPR009072 GO:0046982(InterPro)
Cco02g1497 555 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 362 - -
Cco02g1497 555 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1497 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1497 Cco-Chr2:27515262 Cco10g0413 Cco-Chr10:4919341 4.30E-41 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco02g1497 Cco-Chr2:27515262 5.00E-35 transposed
Cco03g1766 Cco-Chr3:32350393 Cco02g1497 Cco-Chr2:27515262 8.70E-25 transposed
Cco10g2051 Cco-Chr10:33891831 Cco02g1497 Cco-Chr2:27515262 8.20E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g332 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01361 Cam02g1439 Cec02g1460 Cco02g1497 Clacu02g1419 Cmu02g1376 Cre02g1703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0431 . 13 177 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.2 9.1e-49 190.7
Cco02g1012 . 6 117 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.7 7.2e-38 154.5
Cco10g0413 . 6 127 CCAAT-HAP3 Transcription Factor Family AT5G47670 56.6 6.1e-37 151.4
Cco10g0431 . 37 199 CCAAT-HAP3 Transcription Factor Family AT1G21970 61.1 4.4e-51 198.4
Cco07g1001 . 9 137 CCAAT-HAP3 Transcription Factor Family AT1G21970 52.6 2.1e-37 152.9
Cco02g1012 . 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.0 1.4e-56 216.1
Cco10g0413 . 1 151 CCAAT-HAP3 Transcription Factor Family AT4G14540 67.8 1.1e-50 196.4
Cco07g1001 . 28 134 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.1 5.9e-47 184.1
Cco10g2051 . 22 115 CCAAT-HAP3 Transcription Factor Family AT4G14540 87.2 1.3e-43 172.9
Cco02g1497 . 397 510 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.1 3.0e-43 171.8
Cco09g0586 . 44 139 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.9 1.9e-37 152.5
Cco02g1497 . 384 500 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.5 5.9e-49 190.7
Cco10g2051 . 1 115 CCAAT-HAP3 Transcription Factor Family AT2G38880 79.1 3.0e-48 188.3
Cco02g1012 . 1 113 CCAAT-HAP3 Transcription Factor Family AT2G38880 70.8 1.4e-42 169.5
Cco10g0413 . 8 110 CCAAT-HAP3 Transcription Factor Family AT2G38880 73.8 2.7e-41 165.2
Cco07g1001 . 15 121 CCAAT-HAP3 Transcription Factor Family AT2G38880 72.0 3.5e-41 164.9
Cco09g0586 . 32 135 CCAAT-HAP3 Transcription Factor Family AT2G38880 69.8 1.2e-38 156.4
Cco09g0586 . 42 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.7 1.0e-43 173.3
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.0 1.5e-39 159.5
Cco02g1012 . 18 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 71.0 5.8e-39 157.5
Cco07g1001 . 31 139 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.9 4.9e-38 154.5
Cco10g2051 . 1 170 CCAAT-HAP3 Transcription Factor Family AT2G37060 74.3 3.4e-61 231.5
Cco02g1497 . 390 549 CCAAT-HAP3 Transcription Factor Family AT2G37060 71.3 4.8e-55 211.1
Cco02g1012 . 6 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.6 1.3e-44 176.4
Cco07g1001 . 30 135 CCAAT-HAP3 Transcription Factor Family AT2G37060 73.6 3.9e-41 164.9
Cco10g0413 . 2 113 CCAAT-HAP3 Transcription Factor Family AT2G37060 70.8 3.9e-41 164.9
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT2G37060 68.9 7.7e-37 150.6
Cco07g1001 . 18 132 CCAAT-HAP3 Transcription Factor Family AT2G13570 75.0 2.1e-44 176.0
Cco02g1012 . 22 123 CCAAT-HAP3 Transcription Factor Family AT2G13570 81.4 3.6e-44 175.3
Cco10g2051 . 7 120 CCAAT-HAP3 Transcription Factor Family AT2G13570 69.7 1.3e-41 166.8
Cco10g0413 . 19 114 CCAAT-HAP3 Transcription Factor Family AT2G13570 80.2 2.2e-41 166.0
Cco02g1497 . 410 504 CCAAT-HAP3 Transcription Factor Family AT2G13570 74.7 2.7e-39 159.1
Cco09g0586 . 20 144 CCAAT-HAP3 Transcription Factor Family AT2G13570 63.2 2.7e-39 159.1
Cco02g1012 . 1 132 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.5 4.2e-52 201.4
Cco10g0413 . 1 117 CCAAT-HAP3 Transcription Factor Family AT5G47640 82.3 1.0e-50 196.8
Cco07g1001 . 26 131 CCAAT-HAP3 Transcription Factor Family AT5G47640 80.2 8.4e-45 177.2
Cco02g1497 . 410 520 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.8 6.0e-43 171.0
Cco10g2051 . 11 124 CCAAT-HAP3 Transcription Factor Family AT5G47640 71.1 5.1e-42 167.9
Cco09g0586 . 44 140 CCAAT-HAP3 Transcription Factor Family AT5G47640 76.3 1.2e-38 156.8
Cco10g2051 . 12 170 CCAAT-HAP3 Transcription Factor Family AT3G53340 72.9 1.4e-57 219.5
Cco02g1497 . 395 548 CCAAT-HAP3 Transcription Factor Family AT3G53340 70.8 8.3e-55 210.3
Cco02g1012 . 6 125 CCAAT-HAP3 Transcription Factor Family AT3G53340 71.7 2.7e-45 178.7
Cco10g0413 . 6 113 CCAAT-HAP3 Transcription Factor Family AT3G53340 73.4 1.4e-41 166.4
Cco07g1001 . 19 123 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.3 6.8e-41 164.1
Cco09g0586 . 43 145 CCAAT-HAP3 Transcription Factor Family AT3G53340 69.9 1.6e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006362 1 6 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58789 PF01063 Aminotran_4 1.60E-14 No_clan Cco TF