Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1497 | ATGACGAGCTTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGACAGGCACATGAAAAGGCTGAGTCAATCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTCGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCGTATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTTGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCGTTCCCGGTTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAAACTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG | 1668 | 45.5 | MTSFRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDRILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPVARQIQKFLLFPSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDETAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE | 555 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 27515262 | 27528816 | + | CcPI632755_02g014970.1 | Cco02g1497 | 172254 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1497 | 555 | MobiDBLite | consensus disorder prediction | 379 | 411 | - | - | |
Cco02g1497 | 555 | PRINTS | CCAAT-binding transcription factor subunit A signature | 481 | 499 | - | - | |
Cco02g1497 | 555 | PRINTS | CCAAT-binding transcription factor subunit A signature | 443 | 461 | - | - | |
Cco02g1497 | 555 | PRINTS | CCAAT-binding transcription factor subunit A signature | 462 | 480 | - | - | |
Cco02g1497 | 555 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 446 | 462 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco02g1497 | 555 | Gene3D | Histone, subunit A | 405 | 533 | IPR009072 | GO:0046982(InterPro) | |
Cco02g1497 | 555 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 415 | 479 | IPR003958 | - | |
Cco02g1497 | 555 | Gene3D | - | 171 | 367 | IPR043132 | - | |
Cco02g1497 | 555 | MobiDBLite | consensus disorder prediction | 502 | 527 | - | - | |
Cco02g1497 | 555 | MobiDBLite | consensus disorder prediction | 395 | 409 | - | - | |
Cco02g1497 | 555 | Pfam | Amino-transferase class IV | 31 | 305 | IPR001544 | GO:0003824(InterPro) | |
Cco02g1497 | 555 | Gene3D | - | 30 | 89 | IPR043131 | - | |
Cco02g1497 | 555 | FunFam | Nuclear factor Y, subunit B1 | 405 | 504 | - | - | |
Cco02g1497 | 555 | SUPERFAMILY | Histone-fold | 412 | 513 | IPR009072 | GO:0046982(InterPro) | |
Cco02g1497 | 555 | PANTHER | D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN | 1 | 362 | - | - | |
Cco02g1497 | 555 | SUPERFAMILY | D-aminoacid aminotransferase-like PLP-dependent enzymes | 20 | 311 | IPR036038 | GO:0003824(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1497 | Cco-Chr2:27515262 | Cco10g0413 | Cco-Chr10:4919341 | 4.30E-41 | dispersed | |
Cco09g0586 | Cco-Chr9:5161785 | Cco02g1497 | Cco-Chr2:27515262 | 5.00E-35 | transposed | |
Cco03g1766 | Cco-Chr3:32350393 | Cco02g1497 | Cco-Chr2:27515262 | 8.70E-25 | transposed | |
Cco10g2051 | Cco-Chr10:33891831 | Cco02g1497 | Cco-Chr2:27515262 | 8.20E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58789 | PF01063 | Aminotran_4 | 1.60E-14 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1497 | - | - | - | 0.0 |