Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1497 ATGACGAGCTTCCGATTCTTGTTCAGCAATGGCGTCGTATTGCAAGGCTCCGAAGCTCCTCCGGTCGCCACCTTCCTCGAAACTCATCCTGGCGCTTATACAACCACTCGGTCACATAATAATGCATCGAGCATTCTGTTTTGGGACAGGCACATGAAAAGGCTGAGTCAATCGGTGAAAATTCTGTCGAATTCAAGTCCACTACTCTTGTCTGAATCTAACAGAACAATCAATAAACTGGTAAAACCGTCGTGGATAGATTCTGTTCCCTGGGAACCAGCTATCCGGACGCTTGTTGATGATTCAATGAGAAAAGTGTTGCCAACAGCATTGAATGAGAGAATTGGGGGAGAAGAATTGACAATTACAGTGCTCGTAAGTGTGAATTTGGAAAATTTGGGTGAAAGTGACGGTGTTGTGGATGTAGAAAGACTTAAAGAGGCCCTTGATGTGCACGTGCATGTTGGTAGTTATGTTCCTCGTGAATTTGGTGTCCCGGAAAATGGTGCGAATCTCGCTGTGGTGGGTCGAGGGAGGGATGTTGCTGCGGCAAAGTACTCAGATTGGGTTAGGCGTAGGAAGTCTCTGGAAAAATTGAGGCCTCCATCTGTGACCGAGCTTTTGTTGTCAAATGATGGTGATCGTATACTTGAAGGCTGCGTGACAAACTTTTTTGTTGTTTGCCGCAAGAATAATAATGAAGCCAAAGAGACAAGCGTTCTTGATTCCGCAAGAACATATTCCTTTGAACTGCAGACAGCTCCCATTAATGATGGTGTTCTGACTGGAGTTATTCGTCAATTAGTCATTGAAGCTTGTTCAAGCAACGGCATCCCATTTCGAGAAGTTGCACCTACTTGGTCAAGTAATGAAATATGGGAAGAAGCATTTGTTACAAGTAGCTTGAGAATCGTGGAGCATGTGAATACTATTTGCATCCCTAGCATATGGGACTTGCTTGACTCGAAAACGTGGAGTGATATATCATGGAACAAGAAGTCGTTTAAGGATGCTCCTGGAATGATCTCAAGCACAATCCAGAAAGAGATAATGGAGAAAGCTGTTGCAGAAGCGTTCCCGGTTGCGCGCCAAATACAAAAATTTCTCCTCTTTCCCTCTTCTTCTTCTTCCTTTCAGGATCTCCCTCATATGGCGGAGCCTCCCACCAGTCCGGCCGGCGGCAGCCACGAAAGCGGCGGTGAGCAGAGCCCTAACACAGGTGGCGTTCGTGAACAGGACCGATTTCTTCCGATCGCTAATATTAGTCGGATCATGAAGAAAGCCTTACCTGCTAATGGCAAGATCGCTAAAGACGCTAAAGATACCGTCCAGGAATGCGTCTCTGAATTCATTAGCTTCGTTACTAGCGAGGCGAGTGATAAGTGTCAGAAGGAGAAGAGGAAGACTATTAATGGAGATGACTTGCTTTGGGCAATGGCGACGTTGGGATTTGAGGAATATATTGATCCGCTTAAGTCGTACCTTACTAGATACAGAGAGTGTGATGCTAAAGGATCTTCTAGGGGTGGTGACGAAACTGCTAAAAGAGATCCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAATACATGCAGCCGGGAGCATTGACCTACATAAACACTCAAGGACAGCATATGATCATTCCTTCAATGCAGAATAATGAATAG 1668 45.5 MTSFRFLFSNGVVLQGSEAPPVATFLETHPGAYTTTRSHNNASSILFWDRHMKRLSQSVKILSNSSPLLLSESNRTINKLVKPSWIDSVPWEPAIRTLVDDSMRKVLPTALNERIGGEELTITVLVSVNLENLGESDGVVDVERLKEALDVHVHVGSYVPREFGVPENGANLAVVGRGRDVAAAKYSDWVRRRKSLEKLRPPSVTELLLSNDGDRILEGCVTNFFVVCRKNNNEAKETSVLDSARTYSFELQTAPINDGVLTGVIRQLVIEACSSNGIPFREVAPTWSSNEIWEEAFVTSSLRIVEHVNTICIPSIWDLLDSKTWSDISWNKKSFKDAPGMISSTIQKEIMEKAVAEAFPVARQIQKFLLFPSSSSSFQDLPHMAEPPTSPAGGSHESGGEQSPNTGGVREQDRFLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEEYIDPLKSYLTRYRECDAKGSSRGGDETAKRDPVGALPGQNSQQYMQPGALTYINTQGQHMIIPSMQNNE 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27515262 27528816 + CcPI632755_02g014970.1 Cco02g1497 172254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1497 555 MobiDBLite consensus disorder prediction 379 411 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 481 499 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 443 461 - -
Cco02g1497 555 PRINTS CCAAT-binding transcription factor subunit A signature 462 480 - -
Cco02g1497 555 ProSitePatterns NF-YB/HAP3 subunit signature. 446 462 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco02g1497 555 Gene3D Histone, subunit A 405 533 IPR009072 GO:0046982(InterPro)
Cco02g1497 555 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 415 479 IPR003958 -
Cco02g1497 555 Gene3D - 171 367 IPR043132 -
Cco02g1497 555 MobiDBLite consensus disorder prediction 502 527 - -
Cco02g1497 555 MobiDBLite consensus disorder prediction 395 409 - -
Cco02g1497 555 Pfam Amino-transferase class IV 31 305 IPR001544 GO:0003824(InterPro)
Cco02g1497 555 Gene3D - 30 89 IPR043131 -
Cco02g1497 555 FunFam Nuclear factor Y, subunit B1 405 504 - -
Cco02g1497 555 SUPERFAMILY Histone-fold 412 513 IPR009072 GO:0046982(InterPro)
Cco02g1497 555 PANTHER D-AMINOACID AMINOTRANSFERASE-LIKE PLP-DEPENDENT ENZYMES SUPERFAMILY PROTEIN 1 362 - -
Cco02g1497 555 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 311 IPR036038 GO:0003824(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1497 Cco-Chr2:27515262 Cco10g0413 Cco-Chr10:4919341 4.30E-41 dispersed
Cco09g0586 Cco-Chr9:5161785 Cco02g1497 Cco-Chr2:27515262 5.00E-35 transposed
Cco03g1766 Cco-Chr3:32350393 Cco02g1497 Cco-Chr2:27515262 8.70E-25 transposed
Cco10g2051 Cco-Chr10:33891831 Cco02g1497 Cco-Chr2:27515262 8.20E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58789 PF01063 Aminotran_4 1.60E-14 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1497 - - - 0.0