Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1504 ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTGCGAGATCCAGTTTACGGTAGTGCGGGTGCAATTTGTCAGTTGCAAAAGCAAGTGAGCGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAACATGCAACAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCTGTTTGGCCGCCGCAGCTCATCGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA 546 52.75 MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27627675 27628850 + CcPI632755_02g015040.1 Cco02g1504 172261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1504 181 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 139 - -
Cco02g1504 181 Pfam Lateral organ boundaries (LOB) domain 30 127 IPR004883 -
Cco02g1504 181 Coils Coil 109 143 - -
Cco02g1504 181 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Cco02g1504 181 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1504 Cco-Chr2:27627675 Cco02g2238 Cco-Chr2:34988973 4.40E-51 dispersed
Cco02g1504 Cco-Chr2:27627675 Cco02g1984 Cco-Chr2:32785538 1.80E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58790 PF03195 LOB 1.30E-40 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1504 - - - 0.0