Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1504 | ATGTCTTCTTCCTCCACCGCCACCAATTTTGCTTCCCCACCCACTTCTCAGCCCTCCTCTCCTCCTCCGCCTGCCGTCGTCCTCAGCCCCTGCGCCGCCTGTAAAATCCTCCGCCGCCGCTGCGTCGAGAAATGTGTTTTGGCTCCATATTTCCCTCCCACTGAGCCTCTTAAGTTCACCATTGCCCATAGAGTTTTTGGTGCTAGCAATATCATCAAGTTCTTGCAAGAGCTTCCAGAGTCTCAAAGAACAGATGCAGTGAGCAGTATGGTATACGAAGCAAATGCTCGACTGCGAGATCCAGTTTACGGTAGTGCGGGTGCAATTTGTCAGTTGCAAAAGCAAGTGAGCGAGTTGCAAGCTCAACTAGCCAAGGCTAGGGCAGAGGTGGCCAACATGCAACAACAACAAGCCAACTTACTAGCCTTGATTTGCATGGAAATGAGGCAGTCACCAGAACCTGTTTGGCCGCCGCAGCTCATCGACACTGCATGTTTCCTCGACGATGCCACCCTTAGCTCGCCGTGGGAGCCACTTTGGACATGA | 546 | 52.75 | MSSSSTATNFASPPTSQPSSPPPPAVVLSPCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPESQRTDAVSSMVYEANARLRDPVYGSAGAICQLQKQVSELQAQLAKARAEVANMQQQQANLLALICMEMRQSPEPVWPPQLIDTACFLDDATLSSPWEPLWT | 181 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 27627675 | 27628850 | + | CcPI632755_02g015040.1 | Cco02g1504 | 172261 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1504 | 181 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 29 | 139 | - | - | |
Cco02g1504 | 181 | Pfam | Lateral organ boundaries (LOB) domain | 30 | 127 | IPR004883 | - | |
Cco02g1504 | 181 | Coils | Coil | 109 | 143 | - | - | |
Cco02g1504 | 181 | ProSiteProfiles | LOB domain profile. | 29 | 130 | IPR004883 | - | |
Cco02g1504 | 181 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1504 | Cco-Chr2:27627675 | Cco02g2238 | Cco-Chr2:34988973 | 4.40E-51 | dispersed | |
Cco02g1504 | Cco-Chr2:27627675 | Cco02g1984 | Cco-Chr2:32785538 | 1.80E-33 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58790 | PF03195 | LOB | 1.30E-40 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1504 | - | - | - | 0.0 |