Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1531 ATGTCAAATTCAGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCTCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCCGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCCCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCCGACGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA 774 56.72 MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGSGRREDDPR 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 27943749 27944522 + CcPI632755_02g015310.1 Cco02g1531 172288

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1531 257 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Cco02g1531 257 MobiDBLite consensus disorder prediction 20 51 - -
Cco02g1531 257 MobiDBLite consensus disorder prediction 36 51 - -
Cco02g1531 257 Pfam TCP family transcription factor 39 121 IPR017887 -
Cco02g1531 257 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 153 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER)
Cco02g1531 257 MobiDBLite consensus disorder prediction 112 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1531 K16221 - - csv:101206050 418.698
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0861 Cco-Chr1:9212046 Cco02g1531 Cco-Chr2:27943749 3.40E-76 dispersed
Cco02g1531 Cco-Chr2:27943749 Cco11g1390 Cco-Chr11:26691479 3.90E-29 dispersed
Cco02g1531 Cco-Chr2:27943749 Cco06g1829 Cco-Chr6:28593417 5.10E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0861 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cco02g1531 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cco06g0018 . 59 343 TCP Transcription Factor Family AT2G45680 53.8 2.5e-66 249.6
Cco05g2708 . 63 157 TCP Transcription Factor Family AT3G47620 89.7 8.5e-41 165.2
Cco01g1830 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cco11g1390 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cco11g1390 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Cco05g1567 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cco02g1531 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cco01g0861 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.6e-63 237.3
Cco11g1390 . 147 388 TCP Transcription Factor Family AT1G35560 50.4 1.7e-43 173.7
Cco07g1729 . 43 183 TCP Transcription Factor Family AT3G02150 58.8 5.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001822 4 2 1 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 1 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58791 PF03634 TCP 3.50E-33 No_clan Cco TF