Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g1531 | ATGTCAAATTCAGATCATACCACCAACGCCAATGGCGTCTCCAATGCCGCCGCCATCGAAACCCACAAGAATCAGCCCTCTTCTAACGGAGCTCTCGTCGTCAAAAAACCCCCTTCTAAGGACCGTCACAGTAAAGTCGACGGCCGTGGCCGCCGCATCCGTATGCCCATCATCTGCGCCGCCAGAGTATTTCAGCTGACTCGAGAGCTTGGTCATAAATCCGACGGCCAAACCATCGAGTGGCTCCTTCGCCAGGCCGAGCCTTCCATTATTGCCGCTACTGGTACTGGTACCACCCCTGCTAATTTCTCCTCTGTTTCTCTTTCCGTTAGAGGAAATGGCGGCTCTGCTTCTCTCTCTTCCCCTTCTTCCACCACTTCTACTCTCTCCCTCTCCCGCCCTCAAGCTCTCTCCGGTCCCACGCCGTTCATTCTCGGCAAGCGCGTTAGGTCCGACGATGACGGCAAAGACGATGGGTTAGGAGTGGGTCAAGCGGTTGGGTCCATAGTGGGTCCGACGGGGCCAGGTGGGTACTGGGCGATTCCTGCAAGACCTGATTACGGGCAGGTTTGGAGTTTTGCCGCCGCCGCTCCGTCGGAGATGGTGGTTCAACCAGGGGGGATTTCTCAGCAAGCGTCGTTGTTTGCCCAACAGCAGCAGCCGATTAGAGAAGCATCGGCGGCGAGAGTGGGAAATTACCTTCCTGGTCATCTGAATTTACTGGCGTCTTTGTCCGGCGGAGGTTCTGGACGGCGGGAAGATGACCCTCGCTAA | 774 | 56.72 | MSNSDHTTNANGVSNAAAIETHKNQPSSNGALVVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNGGSASLSSPSSTTSTLSLSRPQALSGPTPFILGKRVRSDDDGKDDGLGVGQAVGSIVGPTGPGGYWAIPARPDYGQVWSFAAAAPSEMVVQPGGISQQASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGSGRREDDPR | 257 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 27943749 | 27944522 | + | CcPI632755_02g015310.1 | Cco02g1531 | 172288 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g1531 | 257 | ProSiteProfiles | TCP domain profile. | 39 | 93 | IPR017887 | - | |
| Cco02g1531 | 257 | MobiDBLite | consensus disorder prediction | 20 | 51 | - | - | |
| Cco02g1531 | 257 | MobiDBLite | consensus disorder prediction | 36 | 51 | - | - | |
| Cco02g1531 | 257 | Pfam | TCP family transcription factor | 39 | 121 | IPR017887 | - | |
| Cco02g1531 | 257 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 17 | 153 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0043565(PANTHER) | |
| Cco02g1531 | 257 | MobiDBLite | consensus disorder prediction | 112 | 136 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0861 | Cco-Chr1:9212046 | Cco02g1531 | Cco-Chr2:27943749 | 3.40E-76 | dispersed | |
| Cco02g1531 | Cco-Chr2:27943749 | Cco11g1390 | Cco-Chr11:26691479 | 3.90E-29 | dispersed | |
| Cco02g1531 | Cco-Chr2:27943749 | Cco06g1829 | Cco-Chr6:28593417 | 5.10E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 58791 | PF03634 | TCP | 3.50E-33 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g1531 | K16221 | - | csv:101206050 | 418.698 |