Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g1533 | ATGTTTCTGGCTATGGCTTCTAGTTCTCGGTACTCGATCTTGCCTCCAATCTGCTCGGAGCTGCTGTCTTTTCATTTCTTAAAGAGGAATATGTCTCGGAAATCCCAGGTGATGGTTTCATTGCAACCCACCAAATCCATGCCAGTTAATTCTCGGTTCATGATTCCACAAGCTGCTGAAACTTTGGAAGAGCCTTATAATCGGAATGCGAAAACCATGGAAGCTAATTCGATAGTTGACAGTGAAAATGGTGCTGCTGGAGATGATGCCGTCAATGGACTCCAATGCAGTATGAACAATATTGATGAGCTGAATGAGGACTCACCATACAATTACAATATTACAACAGTGGAAGAAAGACCCACCATGGATGATGGAGAAGATGGTTTTATGCCTTTACCTTCACCTTCAGTGTCAGCTTCACATAGCGAACGCAGGTGGGGTGACACATCCTCCTACACGCCAAGGAAGATACTTCAGTCTTGGTTTAAACTTCCAAATGGGAATTGGGATCTTGTCAAGATACTATCAACGACAGGAACAGAGTCAGTAGTTTCACTGACTGATGGAAAGGTGTTAAAGGTGAAAGCTGAAAGTTTGATTCCTGCAAATCCGGATATTCTTGATGGTGTTGATGATCTTATGCAACTTAGCTATTTAAATGAGCCTTCAGTATTATATGATCTTGAGTACAGATATAATCAAGATATTATATATACAAAAGCAGGGCCAGTTCTGGTTGCTATCAATCCTTTTAAGAAAGTTGATTTGTATGGAAACGATTACATTGATGCATACAAGCGCAAAACAGTTGATAGCCCGCACGTATATGCCATTACCGATACAGCCATAAGAGAGATGATTCGAGATGAAGTAAATCAATCAATTATAATAAGCGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTGGCCGCTCTTGGCGGTGGAAGTGGAATAGAATATGAGATACTAAAGACCAATCCTATCTTAGAAGCTTTTGGAAATGCAAAAACATTGAGAAATGATAACTCAAGCCGTTTCGGAAAGTTGATAGAAATCCATTTTAGTGAAACTGGGAAAATATCTGGTGCAAATATTCAAACTTTTTTGCTTGAAAAGTCTAGAGTTGTCCAATGCACGGAGGGAGAGAGGTCATACCACATCTTTTATCAACTATGTAGTGGGGCTTCGCCTACACTTAAAGAGAAGCTAAACTTGAGAAGAGCGGAAGAGTACAAATATCTCTCCCAGAGCAGTTGTTTTTCAATAAGTAGAGTAAATGATGCCGAGGAGTTTCGTGTGGTCATGGAAGCACTAGATGTCGTCCATATCAGCAAAGAAGATCAGCACAGTGTATTTGCAATGCTTGCTGCTGTTCTATGGCTGGGAAATGTTTCCTTTAGTGTTATAGACAATGAGAATCATGTGGAGGCTGTGGAAGATGAAGGTTTACAGACTGTTGCTAAACTGATTGAGTGTGAGATTGAGGAGCTTAAACTAGCTTTATCAACTAGAAAAATGAGAGTTGGGAATGACAGCATTGTCCAAAAGCTTACTTTATCTCAGGCAATTGACACAAGAGATGCATTGGCAAAGTCAATTTACGCTTGTTTGTTTGAGTGGCTGGTCGAACAAATTAACAAATCTCTTTCTGTAGGCAAACGACGCACTGGCAGATCCATCAGCATTCTTGATATTTATGGCTTTGAATCATTTGATAGAAATAGTTTTGAACAGTTCTGTATTAACTATGCAAACGAGAGACTACAGCAGCATTTCAATCGTCATTTATTTAAGCTAGAGCAGGAGGAATATATTCAAGATGGCATCGATTGGGCAAAAGTTGATTTTGACGACAACCAAGATTGTCTCAGTCTGTTTGAAAAGAAACCTTTGGGATTGTTGTCCCTGTTAGATGAGGAGTCTACTTTTCCAAATGGGACAGATCTGACCTTCGCGAACAAGCTTAAGCAGCATTTGGGTCCTAATTCTTCTTTTAGAGGAGAACGAGGGAAAGGCTTCACTGTCTATCATTATGCAGGAGAGGTCACTTACGACACAACTGGTTTTCTGGAGAAAAACAGGGACTTGCTACATTTAGATTCGATTCAACTCCTATCCTCATGCTCATGCCATCTCCCTCAGATTTTTGCATCCAACATGCTAACTCAATCGGAAAAGTCCATAGGTGGCACTTTACACAAGTCTGGTGGTGCAGAATCCCAAAAACTAAGTGTTGCAAGAAAGTTTAAGGGTCAATTATTCCAATTGATGCTCCGTCTTGAAAATACAACACCCCATTTTATCCGTTGCATCAAGCCCAACAACGTTCAGTCTCCCAGATTGTATGAGCAAGGACTTGTATTACAACAGTTAAGATGTTGTGGGGTCCTAGAAGTGGTACGAATATCACGAGCTGGTTTTCCTACCCGGATGTCACATCAGAAATTTGCTAGAAGGTATGGTTTCCTTCTACAAGAAAACATTGCATCACAGGATCCCCTAAGTGTCTCTGTCGCAATTCTTCATCAATTCAATATATTGCCTGAAATGTACCAAGTTGGCTATACAAAATTGTTTTTCCGAACTGGGCAGATTGGAGTGCTTGAAGATACAAGAAACCGCACCCTCCATGGGATTCTCTCTGTTCAAAGCTGTTATAGAGGGCATCTGGCTCGACGCCACCTCAAAGAGCTGAAGAGAGGCATTTCCGTACTTCAGTCATTTGCACGTGGGGAGAAAGCAAGAAAAGAATATGCAATCTTGATGCAAAGACATAGGGCTGCTATTTCTATTCAAAAGTGTGTGAAAGCCAGAATTGCTAGTAAACGTTTGAAGAAAGTCTGTGATGCATCACTTACAATACAATCGGTTATCCGTGGCTGGCTGGTCAGGAGATGCTCAGGGGATATAGGTTTAATGAAACCTGGTGGCCTGACGGCAAATGGGTCAGGTGAGGTGCTTGTTAAGTCATCATTCCTTGCAGAATTACAACGCCGTGTCCTGAAGGCCGAGGCTGCTTTGCGAGAGAAAGAAGAGGAAAACGACATCCTCCATCAACGTCTCCAACAGTATGAGAACCGTTGGTCAGAGTATGAGCTGAAAATGAAGTCAATGGAAGAGGTGTGGCAGAGACAAATGAGATCCCTGCAGTCTAGCCTCTCCATTGCAAAGAAAAGCCTAGCAGTTGATGATTCAGAAAGAAATTCTGATGCATCAGTGAACGCAAGCGATGACAGAGGATACAGTTGGGAAGTGGGTAGCAACAACACAGCTAACGAGAGCAATGGAGTAAGACCAATGAATGCAGGTCTCAGCGTCATTAGCCGATTGGCTGAAGAATTCGAACAAAGAAGTCAAGTGTTTGGCGACGATGCAAAGTTCTTGGTAGAGGTAAAATCCGGTCAAGTTGAGGCAAGTCTTGACCCAGACAGGGAACTTAGAAGGTTGAAGCAAATGTTTGAAGCATGGAAGAAAGATTACGGGGGAAGGCTGCGCGAAACGAAAGTGATTTTGAATAAGCTTGGAAATGAAGGTGCCATGGATAGGGTGAAAAAGAAATGGTGGGGCAGAAGGAACAGCACAAGGTATAGTTAA | 3618 | 41.85 | MFLAMASSSRYSILPPICSELLSFHFLKRNMSRKSQVMVSLQPTKSMPVNSRFMIPQAAETLEEPYNRNAKTMEANSIVDSENGAAGDDAVNGLQCSMNNIDELNEDSPYNYNITTVEERPTMDDGEDGFMPLPSPSVSASHSERRWGDTSSYTPRKILQSWFKLPNGNWDLVKILSTTGTESVVSLTDGKVLKVKAESLIPANPDILDGVDDLMQLSYLNEPSVLYDLEYRYNQDIIYTKAGPVLVAINPFKKVDLYGNDYIDAYKRKTVDSPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCTEGERSYHIFYQLCSGASPTLKEKLNLRRAEEYKYLSQSSCFSISRVNDAEEFRVVMEALDVVHISKEDQHSVFAMLAAVLWLGNVSFSVIDNENHVEAVEDEGLQTVAKLIECEIEELKLALSTRKMRVGNDSIVQKLTLSQAIDTRDALAKSIYACLFEWLVEQINKSLSVGKRRTGRSISILDIYGFESFDRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVDFDDNQDCLSLFEKKPLGLLSLLDEESTFPNGTDLTFANKLKQHLGPNSSFRGERGKGFTVYHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSCSCHLPQIFASNMLTQSEKSIGGTLHKSGGAESQKLSVARKFKGQLFQLMLRLENTTPHFIRCIKPNNVQSPRLYEQGLVLQQLRCCGVLEVVRISRAGFPTRMSHQKFARRYGFLLQENIASQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILSVQSCYRGHLARRHLKELKRGISVLQSFARGEKARKEYAILMQRHRAAISIQKCVKARIASKRLKKVCDASLTIQSVIRGWLVRRCSGDIGLMKPGGLTANGSGEVLVKSSFLAELQRRVLKAEAALREKEEENDILHQRLQQYENRWSEYELKMKSMEEVWQRQMRSLQSSLSIAKKSLAVDDSERNSDASVNASDDRGYSWEVGSNNTANESNGVRPMNAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQVEASLDPDRELRRLKQMFEAWKKDYGGRLRETKVILNKLGNEGAMDRVKKKWWGRRNSTRYS | 1205 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 27976250 | 27990301 | + | CcPI632755_02g015330.1 | Cco02g1533 | 172290 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g1533 | 1205 | CDD | MYSc_Myo8 | 223 | 869 | IPR036022 | - | |
| Cco02g1533 | 1205 | MobiDBLite | consensus disorder prediction | 1072 | 1105 | - | - | |
| Cco02g1533 | 1205 | MobiDBLite | consensus disorder prediction | 1089 | 1105 | - | - | |
| Cco02g1533 | 1205 | Pfam | IQ calmodulin-binding motif | 888 | 904 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | Pfam | IQ calmodulin-binding motif | 958 | 973 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | Pfam | IQ calmodulin-binding motif | 908 | 926 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | Pfam | Myosin head (motor domain) | 211 | 869 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | Gene3D | - | 815 | 882 | - | - | |
| Cco02g1533 | 1205 | Gene3D | Kinesin motor domain | 208 | 814 | IPR036961 | - | |
| Cco02g1533 | 1205 | SMART | iq_5 | 931 | 953 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | SMART | iq_5 | 882 | 904 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | SMART | iq_5 | 954 | 976 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | SMART | iq_5 | 905 | 927 | IPR000048 | GO:0005515(InterPro) | |
| Cco02g1533 | 1205 | FunFam | Unconventional myosin-XIX | 579 | 771 | - | - | |
| Cco02g1533 | 1205 | Gene3D | - | 391 | 447 | - | - | |
| Cco02g1533 | 1205 | Gene3D | - | 579 | 771 | - | - | |
| Cco02g1533 | 1205 | ProSiteProfiles | Myosin motor domain profile. | 209 | 881 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | ProSiteProfiles | IQ motif profile. | 885 | 911 | - | - | |
| Cco02g1533 | 1205 | PANTHER | MYOSIN | 161 | 1195 | - | GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER) | |
| Cco02g1533 | 1205 | ProSiteProfiles | Myosin N-terminal SH3-like domain profile. | 156 | 205 | IPR004009 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | FunFam | Myosin heavy chain | 391 | 447 | - | - | |
| Cco02g1533 | 1205 | Gene3D | Myosin VI head, motor domain, U50 subdomain | 448 | 556 | - | - | |
| Cco02g1533 | 1205 | PRINTS | Myosin heavy chain signature | 620 | 648 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | PRINTS | Myosin heavy chain signature | 239 | 258 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | PRINTS | Myosin heavy chain signature | 293 | 318 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | PRINTS | Myosin heavy chain signature | 567 | 595 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | PRINTS | Myosin heavy chain signature | 335 | 362 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | ProSiteProfiles | IQ motif profile. | 906 | 935 | - | - | |
| Cco02g1533 | 1205 | Gene3D | - | 887 | 933 | - | - | |
| Cco02g1533 | 1205 | Gene3D | - | 934 | 975 | - | - | |
| Cco02g1533 | 1205 | Coils | Coil | 1001 | 1049 | - | - | |
| Cco02g1533 | 1205 | SMART | MYSc_2a | 203 | 882 | IPR001609 | GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro) | |
| Cco02g1533 | 1205 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 182 | 930 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g1533 | Cco-Chr2:27976250 | Cco11g1900 | Cco-Chr11:31701923 | 7.10E-307 | dispersed | |
| Cco02g1533 | Cco-Chr2:27976250 | Cco05g0432 | Cco-Chr5:3531561 | 7.40E-163 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g1533 | - | - | - | 0.0 |