Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1568 ATGTATGATAAAAGTCGTAAAGAAGTGATGGGTATGGGAGTGCTTCATCTTCAGCCTGCAAAATGCGTCGATCTAATCGGTTGTAACTTATCCTTGGTTGGGGACAACACTTTAAAAGACAGATTTCCTTCTCTATTTGCTAGAACTCAAAAGGCTAATGGATCGGTTGCAGATATGTGGGACCCATTACTGAAAGCTGGAATTTTTACCCGAAAGAAAAATGGTATCATCTCGGCCAAATCCCGTACTTTAACAATGGCTCTAAAGGGGATTTTAGTTTCAAACACCTTTATCATTTGGTTGGATGACTTGGACTCCAGATTGTCATCACCTTCTGATAGTGGAATGAGAAGATGTGGGTTTAATATAGATGGATTTAACCGTGCAGTCCATGGGAATGATAAGCCGTCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCTGAAGGACTTAAATCGATTGGCCGATCACTCAAGTTTGGGGTGTCTCGAGCTGTATTTCCAGAGGATCTTAAAGAGTCAAAGAAGAAAATCTTCGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTTTTTGTCATATCATGTATTTTGGCAATATCAGTGGACCCACTATTCTTTTATGTTCCTGTCATTAACCAAAGCTTGAACTGTCTTGGCATTGATAGAAAGCTGGCAATTACAGTGACAACATTGCGGACAATCATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGAACAGCTTATATTGCACCATCATCTCGGGTGTTTGGAAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCTAAGCGATACTTGCGGCGGTACTTCATCATTGACTTGGTGTCTGTGCTGCCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTGTAATTGTATTCCTTCAATATATCCCAAGATTTCTTAGAGCGTTTCCATTAGCTTCAGAGTTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCAGGTGCAGCATATTATTTGCTATTATATATGCTTGCAAGTCATATAGTTGGAGCATTATGGTACTTGTTAGCTGTGGAACGCAATGATACATGTTGGCAGAAGTATTGTAATGCCCCTATTTGCAGGAAAGATTTCTTGTATTGTGGTAACCAAGACATGGAAGGTTATGCAACTTGGAACCAGACAGGTGTTGATGGCCTTAAGTCAAGTTGCGCACCTACTGATGGAAATGAACAGTTCGATTTTGGAATCTTTCAACAGGCTTTGTCCTCTGGTATTGCCGCCTCCAAGAATTTTATCGCTAAATACTGTTACTGTCTGTGGTGGGGACTACAAAACTTAAGTACGCTTGGGCAGGGGCTTCAAACAAGCACGTACCCGGGTGAAGTGATCTTTTCTATAGCATTAGCTGTACTTGGTCTCATTCTCTTTGCTCTTCTTATTGGCAATATGCAGACTTACCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAGCAGTGGATGCATCACCGATTGCTGCCGCAGGATCTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAAACCCGTGGGGTGGATGAACAGAGTTTGGTTCAAACTCTACCTAAGGATCTTAGGAGAGATATTAAGCGGCATCTTTGTCTGGCTTTAGTAAGAAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCTATCTGTGAGCGGCTGAAACCATGTTTGTTTACGGAGTACACTTACATAGTCCGTGAGGGTGATCCAGTTGATGAGATGCTTTTCATTATCCGTGGTCGGCTTGAGAGTGTGACCACAGATGGCGGGCGGAGTGGATTTTTCAACCGTTCCTTTCTGAAAGAAGGTGATTTTTGTGGTGAAGAGCTTTTGACCTGGGCTTTGGACCCGAAATCTGGTTCGAATCTTCCGTCTTCTACAAGGACAGTGAAGGCTATTACAGAGGTTGAGGCTTTTGCCCTTGTTGCTGAAGAGTTGAAATTTGTGGCCAGTCAGTTCAGGCGCCTTCACAGTAGACAGGTGCAACATACCTTCCGATTCTACTCACAGCAATGGAGGACCTGGGCTGCCTGCTTCATCCAAGCGGCATGGCGCCGATATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGTTGCAGCAGAAGAATCTGAGGGATCTCATACTGCCACAAGTGGAGGCTCTTATAGTATTCGTGCAACTTTCTTAGCTTCCAAATTTGCTGCCAATGCTCTCCGGGGGGTTCAGCGATACCGGAATGCAAAGAGCGCTCAGGAATTAATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2445 43.35 MYDKSRKEVMGMGVLHLQPAKCVDLIGCNLSLVGDNTLKDRFPSLFARTQKANGSVADMWDPLLKAGIFTRKKNGIISAKSRTLTMALKGILVSNTFIIWLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAISVDPLFFYVPVINQSLNCLGIDRKLAITVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLVSVLPLPQIVVWRFLQRSKGSDVYVTKQALLVIVFLQYIPRFLRAFPLASELKRTTGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQKYCNAPICRKDFLYCGNQDMEGYATWNQTGVDGLKSSCAPTDGNEQFDFGIFQQALSSGIAASKNFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEVAAEESEGSHTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28369951 28383286 + CcPI632755_02g015680.1 Cco02g1568 172325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 498 507 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 234 244 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 245 254 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 548 555 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 362 372 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 PRINTS EAG/ELK/ERG potassium channel family signature 480 491 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cco02g1568 814 Gene3D Helix hairpin bin 513 576 - -
Cco02g1568 814 ProSiteProfiles cAMP/cGMP binding motif profile. 585 669 IPR000595 -
Cco02g1568 814 Gene3D - 190 510 - -
Cco02g1568 814 Pfam Ion transport protein 192 511 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco02g1568 814 SUPERFAMILY cAMP-binding domain-like 514 705 IPR018490 -
Cco02g1568 814 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 163 802 - -
Cco02g1568 814 FunFam Cyclic nucleotide-gated ion channel 1 512 576 - -
Cco02g1568 814 FunFam Cyclic nucleotide-gated ion channel 1 583 701 - -
Cco02g1568 814 SUPERFAMILY Voltage-gated potassium channels 181 507 - -
Cco02g1568 814 CDD CAP_ED 585 716 IPR000595 -
Cco02g1568 814 Gene3D Jelly Rolls 583 703 IPR014710 -
Cco02g1568 814 ProSiteProfiles IQ motif profile. 721 750 - -
Cco02g1568 814 SMART cnmp_10 585 716 IPR000595 -
Cco02g1568 814 Pfam Cyclic nucleotide-binding domain 610 695 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1568 Cco-Chr2:28369951 Cco10g1454 Cco-Chr10:27664234 3.60E-294 dispersed
Cco02g1568 Cco-Chr2:28369951 Cco01g0051 Cco-Chr1:383331 3.00E-208 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1568 K05391 - csv:101219180 1341.25