Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1595 ATGGCTACCAATAATCTAAACAAAGAGCTGTCAAAGAAAACAAACATATTTGGACTAAAAGTATGGGAAGTGATTGGAATTGGAGTAGGCCTATTCATAATCTCAATCCTCTGTATACTCTCACTATGTTTAACCTCATTCAACAAGAAGTCAAAAAAATCATCATCATCATCACCCAACTCCAACACCTTATTCCCTCTCACTCAAATCCCATCTCATTCAAAAGACATAAAGGCAGTTCACATAACAACTACTCACAAAAAGCCAACAACTCAAATGGGAAAATTTGAAACCAATAATAATTACAGCAGTGAATCGGGATCATTGTTTCATCCATTAAGTTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCAGGCACCATCACGACGACAACAATGTACCGACGTTCGACGTCGCCTACTACGACGACGGCTCCTTCGCCGTTGTCGTGTATGCCGGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACTTTGAGAGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTTTAGAGGGAAGTTGTTGAATGGGACACCAGTGGCAGTTAAGAAGATTTTTAATGGACAGGGCCAAGCTGAGAAGGAATTCAGAGCGGAAGTTGAGGCAATTGGGCATGTAAGACATAAGAATCTTGTTCGTCTTTTGGGATATTGCATTGAAGGGACTCACAGGATGTTGGTGTATGAGTATATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATATCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGAATTGCATACTTACACGAAGCCATTGAGCCAAAGGTGGTACATCGAGACATAAAGGCTAGCAACATACTTATAGATGAAAATTTCAATGCTAAAGTATCGGATTTTGGGCTAGCAAAGTTGATGGATGCTGGCAAAACTCATGTCACAACAAGAGTTATGGGTACATTTGGTTATGTGGCTCCTGAATATGCTAACACTGGACTTCTAAATGAGAAGAGCGACGTGTATAGCTTTGGAGTTGTGCTGGTGGAAACAATCACGGGAAGAGATCCAGTGGACTATGGACGTCCCCCCAAACAGGTAAATGTAGTAGATTGGCTGAAAATGATGATTGGAAGTAGAAGATGTGAAGAAGTGGTGGACCCAAAATTAGGGGTTGGAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGTTCTATTGGTTGCATTAAGATGTGTGGATCCTGATTATGACAAGAGACCAAAAATGGGCCAAGTTGTTAGAATGCTTGAATCTCAAGATCATCATTATAATTCTTCTCGTACACCTTCTTCTACTACTACTACTTAA 1413 41.47 MATNNLNKELSKKTNIFGLKVWEVIGIGVGLFIISILCILSLCLTSFNKKSKKSSSSSPNSNTLFPLTQIPSHSKDIKAVHITTTHKKPTTQMGKFETNNNYSSESGSLFHPLSYGYGSQSGDEGSSGTITTTTMYRRSTSPTTTTAPSPLSCMPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVFRGKLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGIAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDAGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSRRCEEVVDPKLGVGGRPSTRGLKRVLLVALRCVDPDYDKRPKMGQVVRMLESQDHHYNSSRTPSSTTTT 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28600451 28605739 + CcPI632755_02g015950.1 Cco02g1595 172352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1595 470 ProSitePatterns Protein kinases ATP-binding region signature. 184 207 IPR017441 GO:0005524(InterPro)
Cco02g1595 470 FunFam Putative receptor-like serine/threonine-protein kinase 254 466 - -
Cco02g1595 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1595 470 FunFam serine/threonine-protein kinase PBS1-like 152 253 - -
Cco02g1595 470 Pfam Protein kinase domain 179 387 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1595 470 PANTHER OS01G0323000 PROTEIN 5 462 IPR052232 -
Cco02g1595 470 SMART serkin_6 178 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1595 470 CDD STKc_IRAK 184 452 - -
Cco02g1595 470 SUPERFAMILY Protein kinase-like (PK-like) 151 456 IPR011009 -
Cco02g1595 470 Gene3D Phosphorylase Kinase; domain 1 153 253 - -
Cco02g1595 470 ProSiteProfiles Protein kinase domain profile. 178 459 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1595 470 Gene3D Transferase(Phosphotransferase) domain 1 254 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1595 Cco-Chr2:28600451 Cco09g2451 Cco-Chr9:38678000 1.50E-151 dispersed
Cco11g1766 Cco-Chr11:30386896 Cco02g1595 Cco-Chr2:28600451 2.20E-63 dispersed
Cco02g1595 Cco-Chr2:28600451 Cco06g0424 Cco-Chr6:4647797 1.40E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86576 PF00069 Pkinase 1.60E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1595 - - - 0.0