Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1595 | ATGGCTACCAATAATCTAAACAAAGAGCTGTCAAAGAAAACAAACATATTTGGACTAAAAGTATGGGAAGTGATTGGAATTGGAGTAGGCCTATTCATAATCTCAATCCTCTGTATACTCTCACTATGTTTAACCTCATTCAACAAGAAGTCAAAAAAATCATCATCATCATCACCCAACTCCAACACCTTATTCCCTCTCACTCAAATCCCATCTCATTCAAAAGACATAAAGGCAGTTCACATAACAACTACTCACAAAAAGCCAACAACTCAAATGGGAAAATTTGAAACCAATAATAATTACAGCAGTGAATCGGGATCATTGTTTCATCCATTAAGTTATGGCTATGGATCACAATCAGGGGATGAAGGCAGCTCAGGCACCATCACGACGACAACAATGTACCGACGTTCGACGTCGCCTACTACGACGACGGCTCCTTCGCCGTTGTCGTGTATGCCGGAGATGTCGCAATTGGGGTGGGGGTATTGGTTTACTTTGAGAGAGCTGGATTTGGCTACTAATTTGTTCTCAGAAGAGAATTTGATTGGAGAAGGAGGGTATGGAGTTGTGTTTAGAGGGAAGTTGTTGAATGGGACACCAGTGGCAGTTAAGAAGATTTTTAATGGACAGGGCCAAGCTGAGAAGGAATTCAGAGCGGAAGTTGAGGCAATTGGGCATGTAAGACATAAGAATCTTGTTCGTCTTTTGGGATATTGCATTGAAGGGACTCACAGGATGTTGGTGTATGAGTATATAAACAATGGAAGCTTAGAGCTATGGCTACATGAAGGAATGGGAGAGAATAGATATCTTACATGGGAGGCTCGAATGAAGATCATGTTGGGGACAGCCAAAGGAATTGCATACTTACACGAAGCCATTGAGCCAAAGGTGGTACATCGAGACATAAAGGCTAGCAACATACTTATAGATGAAAATTTCAATGCTAAAGTATCGGATTTTGGGCTAGCAAAGTTGATGGATGCTGGCAAAACTCATGTCACAACAAGAGTTATGGGTACATTTGGTTATGTGGCTCCTGAATATGCTAACACTGGACTTCTAAATGAGAAGAGCGACGTGTATAGCTTTGGAGTTGTGCTGGTGGAAACAATCACGGGAAGAGATCCAGTGGACTATGGACGTCCCCCCAAACAGGTAAATGTAGTAGATTGGCTGAAAATGATGATTGGAAGTAGAAGATGTGAAGAAGTGGTGGACCCAAAATTAGGGGTTGGAGGAAGGCCATCCACAAGAGGGTTGAAAAGAGTTCTATTGGTTGCATTAAGATGTGTGGATCCTGATTATGACAAGAGACCAAAAATGGGCCAAGTTGTTAGAATGCTTGAATCTCAAGATCATCATTATAATTCTTCTCGTACACCTTCTTCTACTACTACTACTTAA | 1413 | 41.47 | MATNNLNKELSKKTNIFGLKVWEVIGIGVGLFIISILCILSLCLTSFNKKSKKSSSSSPNSNTLFPLTQIPSHSKDIKAVHITTTHKKPTTQMGKFETNNNYSSESGSLFHPLSYGYGSQSGDEGSSGTITTTTMYRRSTSPTTTTAPSPLSCMPEMSQLGWGYWFTLRELDLATNLFSEENLIGEGGYGVVFRGKLLNGTPVAVKKIFNGQGQAEKEFRAEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYINNGSLELWLHEGMGENRYLTWEARMKIMLGTAKGIAYLHEAIEPKVVHRDIKASNILIDENFNAKVSDFGLAKLMDAGKTHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLVETITGRDPVDYGRPPKQVNVVDWLKMMIGSRRCEEVVDPKLGVGGRPSTRGLKRVLLVALRCVDPDYDKRPKMGQVVRMLESQDHHYNSSRTPSSTTTT | 470 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 28600451 | 28605739 | + | CcPI632755_02g015950.1 | Cco02g1595 | 172352 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1595 | 470 | ProSitePatterns | Protein kinases ATP-binding region signature. | 184 | 207 | IPR017441 | GO:0005524(InterPro) | |
Cco02g1595 | 470 | FunFam | Putative receptor-like serine/threonine-protein kinase | 254 | 466 | - | - | |
Cco02g1595 | 470 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 300 | 312 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g1595 | 470 | FunFam | serine/threonine-protein kinase PBS1-like | 152 | 253 | - | - | |
Cco02g1595 | 470 | Pfam | Protein kinase domain | 179 | 387 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1595 | 470 | PANTHER | OS01G0323000 PROTEIN | 5 | 462 | IPR052232 | - | |
Cco02g1595 | 470 | SMART | serkin_6 | 178 | 451 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1595 | 470 | CDD | STKc_IRAK | 184 | 452 | - | - | |
Cco02g1595 | 470 | SUPERFAMILY | Protein kinase-like (PK-like) | 151 | 456 | IPR011009 | - | |
Cco02g1595 | 470 | Gene3D | Phosphorylase Kinase; domain 1 | 153 | 253 | - | - | |
Cco02g1595 | 470 | ProSiteProfiles | Protein kinase domain profile. | 178 | 459 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1595 | 470 | Gene3D | Transferase(Phosphotransferase) domain 1 | 254 | 466 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1595 | Cco-Chr2:28600451 | Cco09g2451 | Cco-Chr9:38678000 | 1.50E-151 | dispersed | |
Cco11g1766 | Cco-Chr11:30386896 | Cco02g1595 | Cco-Chr2:28600451 | 2.20E-63 | dispersed | |
Cco02g1595 | Cco-Chr2:28600451 | Cco06g0424 | Cco-Chr6:4647797 | 1.40E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86576 | PF00069 | Pkinase | 1.60E-47 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1595 | - | - | - | 0.0 |