Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1601 ATGGAAAAAGGAGATAATATTACAGCATTAATAGGGATGATTGTATTGCAAATATGCTATGCTGGTATAAATATTATCTCAAAGCTTGCCATGCAATCTGGAATGAACCCTCTTGTTCTTCTCACTTATAGACAGATTTTTGGCACTTTGGCCATTGCTCCTTTTGCCTTCTTTACTGAAAGGAAAACAAGGCCAAAGATTACTTTTACAGTTCTGATTCAAATCTTTGCGTGTTCCTTATCAGGAGCAACAGGAAACCAGATATTCTTCTTTATTGGGTTGAAGTACACAAACCCAACAATTTCGAGTGCTATGGCCAATGTTCTTCCAGCTGCTACTTTTATTCTTGCTGTTCTTTTCAGACAAGAGAGTGTAAGAATCAAGACCAAGTCTGGTTTTGCAAAGGTAATAGGGACAATTGTGTGTGTATGTGGGGCAATGCTGCTGTCTTTCTACCATGGACACACCATTGACTTAGGTGAATCAAAAATTCACTGGCCATATGTTGAGAGAATGATCAAGGATACAAACCCGGCCAACCGTCAAGGAAACCGTGTCCTCGGCTCGATTTTGTTGCTCTTAAGCTCTTTTGCTTGGGCATTATGGTTTGTCATCCAAGCAAGATTGAGTGTGAAGTTCAAAGCTCCCTATACAAGTACTGCATTGTTGTGCTTCATGGCCTTTTTCCAATGTGGACTCATAGCTGTGATTTCAGAGCACAATATTGCTGCTTGGTCGTTGAAAAGTACGATCCGACTCGTTGCAGCTCTTTACGCGGGAGTTGTGTGCTCTGGATTGACATTTAGCATAACTTCATGGATTATACAAAGGAAAGGCCCTCTCTATGTCTCCATTTTCACCCCTTTATTGCTTATCATTGTGGCCATCGTTAGCTGGGCTCTCCTCCATGAACAACTTTACGTGGGAACTGTTATTGGGTCTATTTTGATAATCATTGGGCTTTATGCTGTGCTATGGGGAAAATCCAAAGAGATGAAAGTAGAAGATGATTACAACATGGAAAAACCAAGAATAGAGAAGCCAAATGGAAATGGGAGTCATATTATTGAGGAGAAGGATGACATGGAATTGCAAATTACATACATCAAATAA 1113 40.16 MEKGDNITALIGMIVLQICYAGINIISKLAMQSGMNPLVLLTYRQIFGTLAIAPFAFFTERKTRPKITFTVLIQIFACSLSGATGNQIFFFIGLKYTNPTISSAMANVLPAATFILAVLFRQESVRIKTKSGFAKVIGTIVCVCGAMLLSFYHGHTIDLGESKIHWPYVERMIKDTNPANRQGNRVLGSILLLLSSFAWALWFVIQARLSVKFKAPYTSTALLCFMAFFQCGLIAVISEHNIAAWSLKSTIRLVAALYAGVVCSGLTFSITSWIIQRKGPLYVSIFTPLLLIIVAIVSWALLHEQLYVGTVIGSILIIIGLYAVLWGKSKEMKVEDDYNMEKPRIEKPNGNGSHIIEEKDDMELQITYIK 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28650030 28653094 + CcPI632755_02g016010.1 Cco02g1601 172358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1601 370 Pfam EamA-like transporter family 9 150 IPR000620 GO:0016020(InterPro)
Cco02g1601 370 Pfam EamA-like transporter family 187 325 IPR000620 GO:0016020(InterPro)
Cco02g1601 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 153 - -
Cco02g1601 370 PANTHER WAT1-RELATED PROTEIN 12 337 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cco02g1601 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0432 Cco-Chr1:4311285 Cco02g1601 Cco-Chr2:28650030 8.00E-33 dispersed
Cco01g1164 Cco-Chr1:17277539 Cco02g1601 Cco-Chr2:28650030 3.50E-118 dispersed
Cco02g1601 Cco-Chr2:28650030 Cco04g0696 Cco-Chr4:21559731 1.10E-69 dispersed
Cco02g1601 Cco-Chr2:28650030 Cco11g1620 Cco-Chr11:29020257 4.00E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1601 - - - 0.0