Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1621 ATGGAATTTGAAGAAGCCTCTCTCTTGCAAAAAGTCTGTGCTCTTTACAACCAAATCTCAAGCCTCGCTAGCCTCGAGCCTTCAAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCTCCACCTGCCCCTGGCCTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATTCGCCTTTGTGCTAAAGCTGAAGCTCTTCTTGAACTTCATTTCTCTTCCATTTTGGCTTCCTCTTTTGATAATCCCATTTCTAACTTGTCTATCTTCCCTTACTACTCTAACTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTGTCGTCATGTCCCCGCTACCGTCGCGTTCCTTGGCTCTGGACCCCTCCCGCTCTCCTCCATTGTCATGGCCTCTATCCATCTTAAGGGAACTATTTTCCACAACTTTGACATTGATCCAGCTGCAAACACCATGGCTAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTCCACACAACAGATGTAATGGAAGTGACAAAGGGATTAAAAGATTATGAAGTAGTTTTCTTAGCAGCATTGGTAGGATTAGAAGAGGAAGAAAAAGGAAGAGTTCTAAGGCATTTGGGGAAACATATGGCAGCTGGTGCTTATTTGATGCTAAGAAGTGCACATGGAGCTAGAGCATTTTTATATCCTGTTGTTGATATTTGTAATGTTGAAGCTTCTGGATTTGAGATTTTATCTGTGTTCCATCCCACTGATGAAGTTATAAACTCTGTTGTTATTGCAAGGAAAAAACTAGTGTTTGATCGAAACTCGATCGAGGATGAGGATGAGGATGAGGATGACGACGAGGACGATGAGAAGCGAGGTATATTAGTTAATACCTCATCTATTTTGTTGCCTGAGAAATGCTCTGGGTTTAATGGCTTTAGTCCCATGATTGAAGAGCAACTTTCTTGA 993 42.09 MEFEEASLLQKVCALYNQISSLASLEPSKNVDTLFTQLVLTCSPPAPGLDIASLSQPLQAMRAHLIRLCAKAEALLELHFSSILASSFDNPISNLSIFPYYSNYLKLSLLEFDILRSHCRHVPATVAFLGSGPLPLSSIVMASIHLKGTIFHNFDIDPAANTMASQLVCSDPDLSQRMIFHTTDVMEVTKGLKDYEVVFLAALVGLEEEEKGRVLRHLGKHMAAGAYLMLRSAHGARAFLYPVVDICNVEASGFEILSVFHPTDEVINSVVIARKKLVFDRNSIEDEDEDEDDDEDDEKRGILVNTSSILLPEKCSGFNGFSPMIEEQLS 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28833283 28834967 - CcPI632755_02g016210.1 Cco02g1621 172378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1621 330 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 280 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1621 330 PANTHER NICOTIANAMINE SYNTHASE 3 4 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1621 330 Gene3D Vaccinia Virus protein VP39 9 276 IPR029063 -
Cco02g1621 330 Pfam Nicotianamine synthase protein 5 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1621 Cco-Chr2:28833283 Cco03g1834 Cco-Chr3:33027459 4.60E-99 dispersed
Cco02g1621 Cco-Chr2:28833283 Cco02g1622 Cco-Chr2:28846480 2.40E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1621 K05953 - csv:101203651 542.347