Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1622 ATGTGTTGCCAAGGTCTTCTTTTGGTTCAAAAAATCTCAGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAACCCTCTAAAGATGTCAACTCTCTCTTCTCTCAACTTGTTCTCATTTGCACCCCTCCCCCGTCTTCTCCGTCATCCATCGACATCTCGGCGCTTTGCTCCGCCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGCCGAGGCCGAGGCGCTTCTCGAGCATCACTACTCCACCATTTTAGCCTCTCACCAAAACCCACTTGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACCCACCTTGAATTCTCCATTTTGAACCACCACGCGCCCCACGCGCCACCCACCAAGGTGGCCTTTGTTGGCTCCGGTGCACTCCCGTTCTCGTCGATCATCATGGCCTCGAAGTACCTTCCAAAAACCGAGTTCCACAACTTCGACGTCGACCCGTCTGCCAATGCGAAAGCAGCAATGCTAGTAGCTGGCGATGCAGACCTGTCGAGGCGGATGGTGTTCCACACGACTAACATCATGGACGTTGTCTCAGATCAGTTGAGGAAGTTTGAGGTCGTATTTTTGGCAGCGTTGGTGGGGATGGAGAGGGAAGAGAAGGTGAAAGTGATTGAGCATTTGAGGAAGAATATGGGAGGTGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTCACAATGTTTCATCCCACGGATGAAGTTATTAATTCAATTGTGTTGGCACGATTATAA 834 50.0 MCCQGLLLVQKISELYHKISTLESLKPSKDVNSLFSQLVLICTPPPSSPSSIDISALCSAVQTMRSHLIKLCAEAEALLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHAPHAPPTKVAFVGSGALPFSSIIMASKYLPKTEFHNFDVDPSANAKAAMLVAGDADLSRRMVFHTTNIMDVVSDQLRKFEVVFLAALVGMEREEKVKVIEHLRKNMGGGALLMLRSAYGARAFLYPVVEACDLRGFEILTMFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28846480 28847313 - CcPI632755_02g016220.1 Cco02g1622 172379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1622 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
Cco02g1622 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1622 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1622 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1622 Cco-Chr2:28846480 Cco03g1834 Cco-Chr3:33027459 2.10E-84 dispersed
Cco02g1621 Cco-Chr2:28833283 Cco02g1622 Cco-Chr2:28846480 2.40E-87 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1622 K05953 - csv:101219339 477.248