Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1622 ATGTGTTGCCAAGGTCTTCTTTTGGTTCAAAAAATCTCAGAACTTTACCACAAAATCTCCACTCTTGAAAGCCTCAAACCCTCTAAAGATGTCAACTCTCTCTTCTCTCAACTTGTTCTCATTTGCACCCCTCCCCCGTCTTCTCCGTCATCCATCGACATCTCGGCGCTTTGCTCCGCCGTCCAAACCATGAGATCCCATCTCATCAAGCTCTGCGCCGAGGCCGAGGCGCTTCTCGAGCATCACTACTCCACCATTTTAGCCTCTCACCAAAACCCACTTGACCATCTCTCCCTTTTCCCTTATTACTCCAACTACCTCAAACTAACCCACCTTGAATTCTCCATTTTGAACCACCACGCGCCCCACGCGCCACCCACCAAGGTGGCCTTTGTTGGCTCCGGTGCACTCCCGTTCTCGTCGATCATCATGGCCTCGAAGTACCTTCCAAAAACCGAGTTCCACAACTTCGACGTCGACCCGTCTGCCAATGCGAAAGCAGCAATGCTAGTAGCTGGCGATGCAGACCTGTCGAGGCGGATGGTGTTCCACACGACTAACATCATGGACGTTGTCTCAGATCAGTTGAGGAAGTTTGAGGTCGTATTTTTGGCAGCGTTGGTGGGGATGGAGAGGGAAGAGAAGGTGAAAGTGATTGAGCATTTGAGGAAGAATATGGGAGGTGGCGCGTTGTTGATGTTGAGGAGCGCGTATGGTGCACGCGCGTTTCTTTATCCGGTGGTGGAAGCTTGTGATCTTCGAGGGTTTGAGATTCTCACAATGTTTCATCCCACGGATGAAGTTATTAATTCAATTGTGTTGGCACGATTATAA 834 50.0 MCCQGLLLVQKISELYHKISTLESLKPSKDVNSLFSQLVLICTPPPSSPSSIDISALCSAVQTMRSHLIKLCAEAEALLEHHYSTILASHQNPLDHLSLFPYYSNYLKLTHLEFSILNHHAPHAPPTKVAFVGSGALPFSSIIMASKYLPKTEFHNFDVDPSANAKAAMLVAGDADLSRRMVFHTTNIMDVVSDQLRKFEVVFLAALVGMEREEKVKVIEHLRKNMGGGALLMLRSAYGARAFLYPVVEACDLRGFEILTMFHPTDEVINSIVLARL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 28846480 28847313 - CcPI632755_02g016220.1 Cco02g1622 172379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1622 277 Gene3D Vaccinia Virus protein VP39 4 277 IPR029063 -
Cco02g1622 277 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1622 277 Pfam Nicotianamine synthase protein 7 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Cco02g1622 277 PANTHER NICOTIANAMINE SYNTHASE 3 8 276 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1622 K05953 - - csv:101219339 477.248
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1622 Cco-Chr2:28846480 Cco03g1834 Cco-Chr3:33027459 2.10E-84 dispersed
Cco02g1621 Cco-Chr2:28833283 Cco02g1622 Cco-Chr2:28846480 2.40E-87 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g1621 . 1 275 Nicotianamine Synthase Gene Family AT1G09240 60.5 7.4e-94 340.9
Cco03g1834 . 1 273 Nicotianamine Synthase Gene Family AT1G09240 59.3 1.4e-92 336.7
Cco02g1622 . 1 276 Nicotianamine Synthase Gene Family AT1G09240 59.6 8.5e-90 327.4
Cco06g1519 . 16 284 Nicotianamine Synthase Gene Family AT1G09240 53.6 9.4e-73 270.8
Cco03g1834 . 3 273 Nicotianamine Synthase Gene Family AT1G56430 61.9 7.8e-99 357.5
Cco02g1621 . 4 330 Nicotianamine Synthase Gene Family AT1G56430 54.5 5.6e-97 351.3
Cco02g1622 . 3 276 Nicotianamine Synthase Gene Family AT1G56430 60.0 3.0e-90 328.9
Cco06g1519 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 52.6 5.4e-76 281.6
Cco02g1621 . 1 275 Nicotianamine Synthase Gene Family AT5G04950 58.5 1.3e-90 330.1
Cco02g1622 . 1 276 Nicotianamine Synthase Gene Family AT5G04950 57.0 3.2e-89 325.5
Cco03g1834 . 1 273 Nicotianamine Synthase Gene Family AT5G04950 55.4 1.2e-88 323.6
Cco02g1621 . 1 275 Nicotianamine Synthase Gene Family AT5G56080 59.4 1.8e-92 336.3
Cco03g1834 . 1 273 Nicotianamine Synthase Gene Family AT5G56080 56.4 9.4e-89 323.9
Cco02g1622 . 1 276 Nicotianamine Synthase Gene Family AT5G56080 56.5 6.1e-88 321.2
Cco06g1519 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 51.3 1.5e-70 263.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125