Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g1635 | ATGATGAGAGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGTGATGGAGCAAAAGGAAACCGGAAACCGCCGCCGGCCGGCGAACGGAGATTAGGGGCGTTGCGAGCATCGAACTCACAACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACGCCCTTTAGGTCAAGGTTGTTTTGGGCAGCGATGGCTCATACCAGCAATACTGCAGCTGGAGTTGATAACACCTTTAGAAGGAAATTTGATCGGGAGGAGTATTTGGAACGAGCTCGTGAGCGTGAAAAACAGGAGGTTGAGAGGGTTAAGTCCAAATTGAAAGGTCCACCAGTGCAAAGAAAACCATTGAAACATAGAGATTACGAGGTAGACCTTGAGTCCCGATTGGGAAAAACCCAGGTTGTCACTCCAGTTGCACCTCTAAGCCAGCAGGCTGGATACTACTGTTCTGTTTGTGAATGTGTAGTCAAGGATTCCGCAAATTACTTGGATCATATCAATGGAAAGAAACATCAGAGAGCCTTGGGTATGTCCATGCGGGTAGAACGGGCATCTCTTGAACAGGTGCAGGAGCGGTTTGAAGTTCTTAAAAAGAGAAAAACGCCAGGAAGCTTCACAGAGCAAGACCTTGAAGAGCGTATACTAAAGCAACAACAAGAAGAAGAACAACGAAAGCGTGAGCGACGAGAAAGGAAGAAAGAAAAGAAGAAAGAGAAGGCTGCAGAAGAGGAACCTGAAGTAGATCCTGATGTTGCAGCAATGATGGGATTTGGAGGGTTCCGTTCATCAAAGAAGTGA | 807 | 47.34 | MMRGDGDGDGDGDGDGDGAKGNRKPPPAGERRLGALRASNSQPLAPEARIIPLDQTPFRSRLFWAAMAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYEVDLESRLGKTQVVTPVAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLEQVQERFEVLKKRKTPGSFTEQDLEERILKQQQEEEQRKRERRERKKEKKKEKAAEEEPEVDPDVAAMMGFGGFRSSKK | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 28941802 | 28949030 | - | CcPI632755_02g016350.1 | Cco02g1635 | 172392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g1635 | 268 | Coils | Coil | 210 | 247 | - | - | |
| Cco02g1635 | 268 | MobiDBLite | consensus disorder prediction | 203 | 268 | - | - | |
| Cco02g1635 | 268 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cco02g1635 | 268 | PANTHER | ZINC FINGER MATRIN-TYPE PROTEIN 2 | 74 | 268 | IPR040107 | GO:0000398(PANTHER)|GO:0000398(InterPro)|GO:0005681(InterPro)|GO:0046540(PANTHER) | |
| Cco02g1635 | 268 | Coils | Coil | 182 | 202 | - | - | |
| Cco02g1635 | 268 | Coils | Coil | 88 | 108 | - | - | |
| Cco02g1635 | 268 | FunFam | zinc finger matrin-type protein 2-like | 144 | 182 | - | - | |
| Cco02g1635 | 268 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cco02g1635 | 268 | Gene3D | Classic Zinc Finger | 145 | 182 | - | - | |
| Cco02g1635 | 268 | SUPERFAMILY | beta-beta-alpha zinc fingers | 146 | 191 | IPR036236 | - | |
| Cco02g1635 | 268 | Pfam | Zinc-finger of C2H2 type | 150 | 174 | IPR013087 | - | |
| Cco02g1635 | 268 | MobiDBLite | consensus disorder prediction | 203 | 249 | - | - | |
| Cco02g1635 | 268 | SMART | ZnF_U1_5 | 147 | 181 | IPR003604 | GO:0003676(InterPro)|GO:0008270(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g1635 | K12848 | - | csv:101206387 | 326.25 |