Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1646 ATGGGGCATTTCTCTACCATGTTTAATGGGCTGGCAAGGTCATTTTCCTTCAAGAAAGGTAGAAATTCTGGGAGTCTAGGCAACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGATAAAGGATGCAAAAAGGAAAGACTCGATATTATGCACCCCCGGTGTACTCAATGCAGAAGGTTCAGATACTTTTGCTTCAGTGTTCTCGAAGAAAGGCGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACATGATATTTTGTGGGATTTTCGATGGGCACGGACCATGGGGTCACTTTGTTGCAAAGACGGTAAGAGAATCATTGCCGCCTTCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTTCTTGACCCAGAATTGGATTCAGAAAAGAAGCATCAGCGATTTGATATATGGAAGCATTCTTATTTAAGAACTTGTGCTGCCATTGATCACGAACTCGAGCGGCACCGTAAAATCGATGCATTTTACAGTGGAACAACTGCCCTGTCCATTGTTAAACAGGGCGAACTGGTCGTTTTGGCCAACGTAGGTGACTCCCGAGCGGTTTTAGCTACTACTTCAGATGATGGAAGTATAGTACCGGTTCAGCTCACCGTTGATTTCAAACCAAACCTACCTCAGGAGGCTGAGCGGATAATTCAATGCAATGGGAGGGTATTTTGTTTAAGTGACGAGCCGGGAGTTCATAGGGTCTGGCTTCCCAACGAGGAATCCCCGGGATTGGCGATGTCGAGAGCCTTTGGTGATTATTGTATTAAAGAATTCGGACTCATTTCTGTGCCAGAAGTAACACATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCCACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTGGAGATTGTATCGTCAACACCGAATCGAGCGAAATCGTCGAAACGTCTGGTCGAGTGTGCTGTTCGGGCATGGAAACGGAAGAGACGAGGCATTGCAATGGATGATATATCAGCTATCTGTCTCTTCTTCCACTCCTCATCAGAGCAAGATGATCACCTTGTATCCACACTATAG 1104 45.74 MGHFSTMFNGLARSFSFKKGRNSGSLGNEGGREAAKAMIKDAKRKDSILCTPGVLNAEGSDTFASVFSKKGEKGVNQDCCIVWEEFGCQEDMIFCGIFDGHGPWGHFVAKTVRESLPPSLLCHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELERHRKIDAFYSGTTALSIVKQGELVVLANVGDSRAVLATTSDDGSIVPVQLTVDFKPNLPQEAERIIQCNGRVFCLSDEPGVHRVWLPNEESPGLAMSRAFGDYCIKEFGLISVPEVTHRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPNRAKSSKRLVECAVRAWKRKRRGIAMDDISAICLFFHSSSEQDDHLVSTL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29069297 29071098 - CcPI632755_02g016460.1 Cco02g1646 172403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1646 367 PANTHER PROTEIN PHOSPHATASE 46 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco02g1646 367 FunFam Probable protein phosphatase 2C 34 54 355 - -
Cco02g1646 367 Gene3D - 54 356 IPR036457 -
Cco02g1646 367 SMART PP2C_4 52 351 IPR001932 -
Cco02g1646 367 Pfam Protein phosphatase 2C 87 328 IPR001932 -
Cco02g1646 367 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Cco02g1646 367 SUPERFAMILY PP2C-like 57 354 IPR036457 -
Cco02g1646 367 CDD PP2Cc 63 353 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0124 Cco-Chr2:1344607 Cco02g1646 Cco-Chr2:29069297 4.90E-86 dispersed
Cco02g1646 Cco-Chr2:29069297 Cco11g0971 Cco-Chr11:15423598 9.10E-96 dispersed
Cco02g1646 Cco-Chr2:29069297 Cco03g1823 Cco-Chr3:32872880 1.70E-139 wgd
Cco02g1646 Cco-Chr2:29069297 Cco06g0490 Cco-Chr6:5377449 5.30E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1646 - - - 0.0