Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1647 ATGTCGACGGAGAGATTGATTTCCAGTGGTACAACTCCGTCGGAAGCTGAGCCGCCGAAGTTGGCTTCAGCGTCGCACTCGTTCCGGCAATGTGGAGAACCGGCTAGGGTTTTTGAGGAGCTGCCGATTGCTTCCATTGTATCGGTTTCACGGCCGGATACTGGAGATATCAGTCCCTTGCTGTTATCTTATACCATTGAAATTCAATACAAGCAGTTTAAATGGAGCTTAGTGAAGAAAGCATCGCAAGTTCTATATTTACATTTTGCATTGAAGAGACATGCATTTATCAAAGAACTTCACGAGAAACAAGAGCAGGTGAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATGCAACTGTCGTTCATCACGATGACGAATCTGATGATGGGGCTTTTTCTTTGCATGATGAACAAACTACAAGAAACAGGAATGTTCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCACTGGGAGGACAGGGGTCCATTGCACACAAGGCAAAGCTAGCAATGCAAGGTTACTTAAATCACTTTTTTGGGAACTTGGATATTGTAAATTCTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACACGGCCCAAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTAAAACAGCTCACAGGATCTGATTCTAGTATAAAATGTTTTTCATGCCATTGGTGCAGCTGCTGCATGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTTGCCTTGGTTGCTGATCCTATGGACACTAAACTCCTAGATATAATTGTTTTTGATGTGCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCAAGTCAAGGAGCACAATCCTTTACGTTATTCGTTTAAGGTTAGATGCGGAGATGGGGACGTGAGGTTCAGAACTACAAGTACCGCCAAAGTCAAAGAATGGGTCTCATCAATTAATGATGCTGGTTTTGGAACCAAAGATGGCTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGCTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTACATGCGACGTCCTTTTCTCAATCATTCTTCATCACGGCTTGATGCATTGCTGGAAAAAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTACAAGGAGGTTCCTATTGCTCTGAAAATTAACAGTATGTATAGTAAGAAGAGGCTTGTAAATATTCATGAGAACATTAAGGTACTACGTTCTCCTGATCATATGTCAACTGGAATTTACTATTGGTCACATCACGAAAAAATTGTCATCGTTGATCACCACATTTGCTTCATTGGAGGTTTGGATTTATGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAATGATTTCCCTCCTCATATGTGGCCGGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAAAGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTATGGGGATCTCCATGCCGTGATATTGCTCGACACTTTGTTCAGAGGTGGAACCATGCCAAGAGAAACAAAGCCCCAAATGAAGAAAAAATACCTCTACTTATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGCTTAAAAAATAATGACTCGGAGCAAGATCACCAGAGGCAGACCACAGATGATTTCTTTTCCTCTTTATCACCACAGGAAGATATTCCATTACTGATGCCTCCAGAAATTGGTGGACTTCCAGATTCTAACGTGCAAACAAATAGTCTTTGCATGAATCACAATTTTTTCAATCAGCCCATGGAGATACGGAGTAGTGTTATGGATTCTTTCCAAGCATACAATGTTGAACCATTGACCCAATTTGAACAGACAAATGGATTGTTGGATGAATTTGGATTTTTGGATGAGTTTGGTTCTTTTGGTCATCTGAGGGAAGCTACTATTGATACTCCACCATATATGAAAACTTCAAATGATTGGTTGGAAACTGAACACAAAAGTAACCATGTTGTTGCTATAAACGAGGCCAAAGAAATTGGTCCACTTACTACTATCAATTGTCAGGTAATAAGAAGTGCCAGCCAGTGGTCAACAGGAACAAGCAAACCAGAAGCAAGTATTCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCAGGTTTATCAGGGGATGAGACCATACAAAATCGGGTTCTGGATGCACTATACCAACGTATATGGCTGGCTCATAAAGAAAAACAATGTTTTAGAGTTATTGTTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCCGCAACTGTTCGAGCCCTGATGCATTGGCAGTACCGAACAATTAGTTGGGAAAAAACGTCGATACTGTACCGTCTCAATCTTTTATTGGGTCCTAGAACACAAGATTATATTTTGTTTTGTGGCCTTCGATCATATGGCAGACTATTTGATGGTGGTCCAATTGCCACAAGTCAGGTATATGTGCATAGCAAATTGATGATAATTGATGATTGCATTACCTTTATTGGTTCCTCCAATATTAATGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTAATTATTGAGGATAAAGAGTTTGTTGATTCATCTATGAATGGAAAACCTTGGAAAGCTGGAAAATTCGCCCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTCGGTCTTCATCTTGGAGAGGTCAGTCAAATCCTTGATCCTGTAGTAGAAGCGACATACAAAGATTTATGGTTAGCTACGGCAAAGGAAAACACAACAATATATGAAGATGTTTTTTCTTGCATCCCCAGTGACAACATAACCTCAAGATCATCCTTGCGCCAAAGTTTGGCCGATTTGAAGGGCAAACTTGGTCATAATACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAGCTATGAAAATAGGGAATTAAAGATGATAGTTCCAATGGAGAGACTGAGGTGTATTAGGGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGGTTCATTGAGACTGCAATAAAATCAGGGGCGTTGGTTTCACTGAAAGACCTGATGAAGCCATCTTCTGAGTTCTTCAAGGATGGGGCTTCACTTCGAGTTACTGGAAAATTGGTGGAGTATTCTGTAGAGACAGCCATTGCCATAATTGTTGATGGAAATGTTAACTTGAAGATCGACACACAGCATCTGAGAGAACTTAGCATTCGCATTGGCTCCATATATCAATTTATTGGTGAACTACTTGTTCAGTCAGATAACGAGGCAACTTTGCAGGCACGTGTTGGCAGGAATGTTGATGGCATTGACCTCAACCTTTATCATCAGTCCCTGCAGCTGTTAAGACAATTTCAGGCTGATCACTTGAACAAGAGGACAAATTAG 3672 41.26 MSTERLISSGTTPSEAEPPKLASASHSFRQCGEPARVFEELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFKWSLVKKASQVLYLHFALKRHAFIKELHEKQEQVKEWLHNLGIVDHATVVHHDDESDDGAFSLHDEQTTRNRNVPSVAALPIIKPALGGQGSIAHKAKLAMQGYLNHFFGNLDIVNSREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQLTGSDSSIKCFSCHWCSCCMYNWKKVWAVLKPGFFALVADPMDTKLLDIIVFDVLPTLEEKEGSQACLAYQVKEHNPLRYSFKVRCGDGDVRFRTTSTAKVKEWVSSINDAGFGTKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFLNHSSSRLDALLEKKAKEGVKIYILMYKEVPIALKINSMYSKKRLVNIHENIKVLRSPDHMSTGIYYWSHHEKIVIVDHHICFIGGLDLCFGRYDTMEHKVNDFPPHMWPGKDYYNPRESEPNSWEDTMKDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRNKAPNEEKIPLLMPQHDMVLPHYMGRSTELSLKNNDSEQDHQRQTTDDFFSSLSPQEDIPLLMPPEIGGLPDSNVQTNSLCMNHNFFNQPMEIRSSVMDSFQAYNVEPLTQFEQTNGLLDEFGFLDEFGSFGHLREATIDTPPYMKTSNDWLETEHKSNHVVAINEAKEIGPLTTINCQVIRSASQWSTGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRVLDALYQRIWLAHKEKQCFRVIVVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGPRTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSSMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPVVEATYKDLWLATAKENTTIYEDVFSCIPSDNITSRSSLRQSLADLKGKLGHNTLDLGIAAEKIESYENRELKMIVPMERLRCIRGHLVCFPLKFLWQEDLRPGFIETAIKSGALVSLKDLMKPSSEFFKDGASLRVTGKLVEYSVETAIAIIVDGNVNLKIDTQHLRELSIRIGSIYQFIGELLVQSDNEATLQARVGRNVDGIDLNLYHQSLQLLRQFQADHLNKRTN 1223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29092268 29106534 - CcPI632755_02g016470.1 Cco02g1647 172404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1647 1223 Gene3D - 1104 1219 IPR012340 -
Cco02g1647 1223 Gene3D Endonuclease Chain A 721 968 - -
Cco02g1647 1223 Pfam PLD-like domain 909 954 IPR025202 -
Cco02g1647 1223 SMART pld_4 907 934 IPR001736 GO:0003824(InterPro)
Cco02g1647 1223 SMART pld_4 472 499 IPR001736 GO:0003824(InterPro)
Cco02g1647 1223 CDD PLDc_vPLD1_2_yPLD_like_1 365 509 - -
Cco02g1647 1223 FunFam CST complex subunit TEN1 1103 1220 - -
Cco02g1647 1223 Pfam Phospholipase D Active site motif 474 499 IPR001736 GO:0003824(InterPro)
Cco02g1647 1223 SMART PH_update 211 339 IPR001849 -
Cco02g1647 1223 PIRSF PLD_euk 714 1106 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cco02g1647 1223 PIRSF PLD_euk 39 626 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cco02g1647 1223 PANTHER PHOSPHOLIPASE D 191 1089 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco02g1647 1223 FunFam Phospholipase 741 961 - -
Cco02g1647 1223 SUPERFAMILY PH domain-like 211 335 - -
Cco02g1647 1223 Gene3D - 201 337 IPR011993 -
Cco02g1647 1223 Gene3D Endonuclease Chain A 357 600 - -
Cco02g1647 1223 ProSiteProfiles PH domain profile. 210 337 IPR001849 -
Cco02g1647 1223 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 907 934 IPR001736 GO:0003824(InterPro)
Cco02g1647 1223 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 472 499 IPR001736 GO:0003824(InterPro)
Cco02g1647 1223 CDD PLDc_vPLD1_2_yPLD_like_2 767 951 - -
Cco02g1647 1223 Pfam Telomere-capping, CST complex subunit 1103 1216 IPR029146 GO:0003697(InterPro)|GO:1990879(InterPro)
Cco02g1647 1223 MobiDBLite consensus disorder prediction 1 18 - -
Cco02g1647 1223 SUPERFAMILY Phospholipase D/nuclease 747 955 - -
Cco02g1647 1223 CDD PH_PLD 188 335 - -
Cco02g1647 1223 MobiDBLite consensus disorder prediction 1 25 - -
Cco02g1647 1223 SUPERFAMILY Phospholipase D/nuclease 341 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1647 Cco-Chr2:29092268 Cco04g1834 Cco-Chr4:33162808 1.50E-33 dispersed
Cco02g1647 Cco-Chr2:29092268 Cco06g0491 Cco-Chr6:5394628 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1647 K01115 - csv:101220522 2098.94