Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1704 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTCTTTCGCCCTCCTCTCGACAATGATGATTCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGCAAATCCAGAGTGTTTTCTAGGCATTCCCCTTTCTCCTCCGCTCTTCCTCCCATCCCTAAGGACACTGACCCTCCGATTCGATGGCGCAAAGGCGAATTGATTGGCTGTGGCGCCTTTGGTCGCGTTTATATGGGCATGAATCTTGGCTCTGGAGAGCTTCTTGCTGTCAAACAGGTTCTGATTGCTGCAAATGGCGCGTCGAAGGAGAAAGCGCAGGCTCATGTTCAGGAGCTTGAGGAAGAAGTAAAACTTCTGAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGCACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAATTTGTCCCTGGTGGATCGATATCGTCACTTCTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCAAATATCCTTGTAGACAACAAGGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAGGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACTGGGCATAGTTTCTCTGCTGACATATGGAGTGTTGGATGCACTTTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAGCAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGCACAACGAAGTCTCATCCACCAATCCCTGAGCAGCTTTCGGTCGAAGCGAAAGATTTTCTGTTGAAATGTTTGCAGAAGGAACCAAACTTAAGACCAACTGCCTCTGAACTTCTGAAGCATCCTTTTGTTACCGGGGAGGAGGCAGAATCTCAACTTGTGTCACGTGATGCATGCACGGAGCCCCTGGAAATCCATTCTCCTTTATATACTTCAGAACTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGTCTGAGCTGCTCAAAGGTATACACTGCAAATAAACTAGAAAGTGATATATGGGGAGGAAATAGTGATGATGAAATGTGTCAGATTGATGACAAGGACGATTTTATGTTAGATGAAGTAAAAATCGACTCTTCTATTATACATGAGAACATGAAGAGTTATAACCCAATTTGCGAGCCATCTGATGATGAGGATTGCAACTTTGATAGAAGTCCAATAGTAGACCAAGGAAGCAATTTACATGAGGAAGCTCTTGCACCTGGAAGCTGTTCTGGAGTTCTCGATGAGGACCAAAACTTCTCCTTTCCTAGTGGGCGATCACTTTCTGAAGATGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGGATGAGAAGGCTCTTGAATTGAAGAAACTGCAGTCACCGCTCTATGAGGAGTTCTACAATAGTTTGACATCCTGCTCTCCAGTTTTTATCGAGAGTAAGCAAGATGAAAGTACTCCTAAATACTTGAAATTGCCCCCGAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCACTTGATGCTTTTGGCTCTGGTAGCCCAGGGAGTGGTAGCAGGGGTATTGTAAATGATCAAAGGTCACAACTCAACGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCAAGTAAGCATTATTCTGAAATACAGAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAGAAAACGAGAGATGATGCGTCAAGCTGGTGCAGGAGGCAAAACTTCATCTCCAAAGGATAAAGCCATGGGCAGGCCAAGAGAGCGGACAAGATTTGCATCTCCATTCCGGGATGATGCGTCGAGCGCTGGGAGGGAGAACAGGGAAAACTTCATCTCCTGA 2040 44.12 MQDIFASVRRSLVFRPPLDNDDSHSPAIGVGALVDKINSSIRKSRVFSRHSPFSSALPPIPKDTDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQAHVQELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTFIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPTASELLKHPFVTGEEAESQLVSRDACTEPLEIHSPLYTSELEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESDIWGGNSDDEMCQIDDKDDFMLDEVKIDSSIIHENMKSYNPICEPSDDEDCNFDRSPIVDQGSNLHEEALAPGSCSGVLDEDQNFSFPSGRSLSEDEDELTESKIKAFLDEKALELKKLQSPLYEEFYNSLTSCSPVFIESKQDESTPKYLKLPPKSRSPSRSPGNPSPALDAFGSGSPGSGSRGIVNDQRSQLNDWKGLLVDGQSEAGSPSKHYSEIQRKWKEELDQELERKREMMRQAGAGGKTSSPKDKAMGRPRERTRFASPFRDDASSAGRENRENFIS 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29775836 29780805 - CcPI632755_02g017040.1 Cco02g1704 172461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1704 679 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524(InterPro)
Cco02g1704 679 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 49 335 IPR050538 -
Cco02g1704 679 MobiDBLite consensus disorder prediction 576 590 - -
Cco02g1704 679 FunFam Mitogen-activated protein kinase kinase kinase 2 69 361 - -
Cco02g1704 679 SUPERFAMILY Protein kinase-like (PK-like) 69 371 IPR011009 -
Cco02g1704 679 MobiDBLite consensus disorder prediction 646 679 - -
Cco02g1704 679 Coils Coil 103 130 - -
Cco02g1704 679 FunFam Serine/threonine-protein kinase STE11 67 160 - -
Cco02g1704 679 MobiDBLite consensus disorder prediction 539 679 - -
Cco02g1704 679 MobiDBLite consensus disorder prediction 609 634 - -
Cco02g1704 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1704 679 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1704 679 SMART serkin_6 70 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1704 679 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Cco02g1704 679 Coils Coil 614 638 - -
Cco02g1704 679 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1704 679 CDD STKc_MAPKKK 69 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1704 Cco-Chr2:29775836 Cco04g1293 Cco-Chr4:28210022 6.00E-77 dispersed
Cco04g0138 Cco-Chr4:3137137 Cco02g1704 Cco-Chr2:29775836 1.80E-12 dispersed
Cco02g1704 Cco-Chr2:29775836 Cco06g0604 Cco-Chr6:6570251 1.20E-205 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86577 PF00069 Pkinase 4.00E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1704 K20606 - csv:101209358 1223.38