Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1721 ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACTCTTTGTTTGGAGGAGGAATCTGGGCAAATGGAAGCTTTGAATATCCTGAAATCCCTCATGATTTTCTCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCAGCCTCCTCTGTTTTCGTTCCTAATCCTTCCCCCGAAGCTGCCGTTTCCAGAAATGGGTTTCTCTTCAACGACCCAAATCCGCCATTAGAGGCTGAATCAACAACTCCAAATTCAATTCGACCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGAGTCTTATGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGTGCAATTAATTTTGTGAAGGAGCTGGAACAGCAAGTTCAAGTTCTATCCACAATGGAAACAAAGGGGAAGAATAATTCAGAAGGGTGTTGTGATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTGTTCAGTGAGTGAAAATGAGAACCAATGCTCTTCCACCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAGAAGGCCTAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCTACTATCAACCAAATTGCTCTTTACTGTCTCAGTGTCAAGGTTGACGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGCTTAACATTGTTTTCTTTGCTTGTAGATGAACAAAAGGGGATTTTCTTTACAGAGATCCAATCTTTTGCTTTTCTGATCTAA 999 39.74 MALEAVVFSQDPLNYNGSKDLYSLFGGGIWANGSFEYPEIPHDFLENQTENFPFEDWNSASSVFVPNPSPEAAVSRNGFLFNDPNPPLEAESTTPNSIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKGKNNSEGCCDSNSKIPFTEFFSFPQFKAMEGCCSVSENENQCSSTIADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVDDDCKLTSVDEIASALHQLLSLTLFSLLVDEQKGIFFTEIQSFAFLI 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 29936814 29938433 + CcPI632755_02g017210.1 Cco02g1721 172478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1721 332 PANTHER MAX DIMERIZATION, MAD 2 306 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco02g1721 332 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cco02g1721 332 Gene3D - 107 195 IPR036638 GO:0046983(InterPro)
Cco02g1721 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Cco02g1721 332 CDD bHLH_AtFAMA_like 119 187 - -
Cco02g1721 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 177 IPR036638 GO:0046983(InterPro)
Cco02g1721 332 MobiDBLite consensus disorder prediction 81 114 - -
Cco02g1721 332 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1721 Cco-Chr2:29936814 Cco03g1743 Cco-Chr3:32131551 8.30E-56 dispersed
Cco02g1721 Cco-Chr2:29936814 Cco08g1287 Cco-Chr8:24643432 1.00E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58797 PF00010 HLH 8.30E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1721 - - - 0.0