Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1721 | ATGGCATTAGAGGCTGTGGTTTTTTCTCAAGATCCATTAAATTACAATGGAAGCAAAGATCTTTACTCTTTGTTTGGAGGAGGAATCTGGGCAAATGGAAGCTTTGAATATCCTGAAATCCCTCATGATTTTCTCGAGAACCAAACAGAAAATTTCCCATTTGAAGATTGGAACTCAGCCTCCTCTGTTTTCGTTCCTAATCCTTCCCCCGAAGCTGCCGTTTCCAGAAATGGGTTTCTCTTCAACGACCCAAATCCGCCATTAGAGGCTGAATCAACAACTCCAAATTCAATTCGACCCAGAAAACGAAGACCCAAATCCCGCAAGAACAAAGAGGAAATCGAAAATCAGAGAATGACTCACATCGCTGTTGAACGAAATCGAAGAAAACAGATGAATGAGTATCTCTCTGTTCTTCGATCTTTAATGCCAGAGTCTTATGTCCAAAGGGGAGATCAAGCTTCGATTATTGGGGGTGCAATTAATTTTGTGAAGGAGCTGGAACAGCAAGTTCAAGTTCTATCCACAATGGAAACAAAGGGGAAGAATAATTCAGAAGGGTGTTGTGATTCAAATTCAAAAATCCCTTTCACAGAGTTCTTCAGCTTCCCTCAGTTCAAAGCAATGGAGGGTTGTTGTTCAGTGAGTGAAAATGAGAACCAATGCTCTTCCACCATTGCTGACATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATAAGGTCAAAGAGAAGGCCTAAACAAATCTTGAAAATTGTTGCTGGCTTGCATTCTCTTTCCCTCTCTGTTCTTCATCTCAATATCTCTACTATCAACCAAATTGCTCTTTACTGTCTCAGTGTCAAGGTTGACGATGATTGCAAGCTGACTTCTGTTGATGAAATTGCTTCTGCTCTGCATCAGTTGCTTAGCTTAACATTGTTTTCTTTGCTTGTAGATGAACAAAAGGGGATTTTCTTTACAGAGATCCAATCTTTTGCTTTTCTGATCTAA | 999 | 39.74 | MALEAVVFSQDPLNYNGSKDLYSLFGGGIWANGSFEYPEIPHDFLENQTENFPFEDWNSASSVFVPNPSPEAAVSRNGFLFNDPNPPLEAESTTPNSIRPRKRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKGKNNSEGCCDSNSKIPFTEFFSFPQFKAMEGCCSVSENENQCSSTIADIEVTMVENHANLKIRSKRRPKQILKIVAGLHSLSLSVLHLNISTINQIALYCLSVKVDDDCKLTSVDEIASALHQLLSLTLFSLLVDEQKGIFFTEIQSFAFLI | 332 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 29936814 | 29938433 | + | CcPI632755_02g017210.1 | Cco02g1721 | 172478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1721 | 332 | PANTHER | MAX DIMERIZATION, MAD | 2 | 306 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco02g1721 | 332 | Pfam | Helix-loop-helix DNA-binding domain | 117 | 168 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1721 | 332 | Gene3D | - | 107 | 195 | IPR036638 | GO:0046983(InterPro) | |
Cco02g1721 | 332 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 116 | 167 | IPR011598 | GO:0046983(InterPro) | |
Cco02g1721 | 332 | CDD | bHLH_AtFAMA_like | 119 | 187 | - | - | |
Cco02g1721 | 332 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 177 | IPR036638 | GO:0046983(InterPro) | |
Cco02g1721 | 332 | MobiDBLite | consensus disorder prediction | 81 | 114 | - | - | |
Cco02g1721 | 332 | SMART | finulus | 122 | 173 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1721 | Cco-Chr2:29936814 | Cco03g1743 | Cco-Chr3:32131551 | 8.30E-56 | dispersed | |
Cco02g1721 | Cco-Chr2:29936814 | Cco08g1287 | Cco-Chr8:24643432 | 1.00E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58797 | PF00010 | HLH | 8.30E-10 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1721 | - | - | - | 0.0 |