Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1754 ATGGGATGTATAATTAGCCGAGAGGTAGCTTCCAGAAACTTAGCAGATTCCAAGAATAAGAAGGAGAAGATTTCTGAATGTGGTGATGATTTGGAAAGAAAAGAAGCTGGTGTGGCTGTTGTTGATGTTGCTCAGGAGGAAGAGCATGGCCATGGGGCTCAGCCCTTGACAAAAGAGCAGAGAAGAAAGTTGAAACCTAACCTCAGGCTGAGTAATTTGCCAAAGCAATCTCAGGGCGAGCAGGTGGCTGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAGTGGTTGGATTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGAACATACAGTAATGTGTACAAAGCAAAAGATATACTGACTGGTAAAGTCGTTGCACTGAAGAAGGTACGTTTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCCAGAGAGATTCTCATTTTGCGACGCCTAGATCATCCTAATGTTGTAAAGCTAGAGGGTTTGGTTACATCAAGGATGTCATGTAGTTTGTACCTCGTGTTTGAGTACATGGAGCATGATTTAGCTGGTCTTGCTGCAAATCCATCTATCAAATTTACAGAGGCTCAGGTTAAGTGTTTCATGCAACAACTTCTATCAGGACTCGAGCATTGTCACAGCCACAGGGTGCTTCATCGCGATATTAAGGGTTCGAATCTTCTTATTGATGGTGAAGGGTTGCTTAAGATTGCTGACTTTGGACTAGCTACTTTCTTTGATCCAAAACACAAGCACCCATTGACTAATCGTGTTGTAACCTTATGGTATCGATCCCCCGAGCTTCTACTCGGTGCAACTCACTATGGTGTAGGCATCGACCTTTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTAGCTGGGAGGGCCATAATGCCCGGCCGTACAGAGGTTGAGCAACTACATAAGATATTCAAGCTGTGTGGCTCAGCTTCAGATGAATATTTAAAGAGGGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCTTATAAGAGATGTATAAAAGAGACTTTTAAGGATTTCCCACCGTCATCATTTCCCCTTATAGAAACACTTCTTGCAATTGACCCAGCTGAGAGAATGACAGCTACAGATGCATTGAAGAGCGAGTTTTTCACTTCAGAACCTTATGCTTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATGGATGCTAAACGACGGGATGATGAAGCTCGGAGACAAAGAGCAGCAAGTAAATTGCAGAATGATCGTGTGAAGAAGACACACACACGTAACCGTGCTGGTAGGGCCATACCTGTTCAAGGAGCCAATGCAGAACTCCAATCAAATATTGATAGACGGCGTCTAATTACTCATGCAAATGCAAAGAGCAAGAGCGAAAAGTTCCCCCCTCCACATCAAGATGGGGCACTCGGGTTCACATTGGGATATTCACGTCATATTGATCCAGCTGTTATTCCTTCTGATGTTCCATTTAGCTCCACATCATTTGGCTATCCAAACGAACTGGACCAAGCCTGGTCGGGTCCACTGGTTCAGTCTTCTAACATCGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAAAGAACAGCAATCTTCAGTTAAAGGAAAGAAGGCAGCATGA 1686 44.37 MGCIISREVASRNLADSKNKKEKISECGDDLERKEAGVAVVDVAQEEEHGHGAQPLTKEQRRKLKPNLRLSNLPKQSQGEQVAAGWPSWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEAQVKCFMQQLLSGLEHCHSHRVLHRDIKGSNLLIDGEGLLKIADFGLATFFDPKHKHPLTNRVVTLWYRSPELLLGATHYGVGIDLWSAGCILAELLAGRAIMPGRTEVEQLHKIFKLCGSASDEYLKRAKLPNAALFRPREPYKRCIKETFKDFPPSSFPLIETLLAIDPAERMTATDALKSEFFTSEPYACEPSSLPKYPPSKEMDAKRRDDEARRQRAASKLQNDRVKKTHTRNRAGRAIPVQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVIPSDVPFSSTSFGYPNELDQAWSGPLVQSSNIGAQRQKHLGGDAKEQQSSVKGKKAA 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30303719 30309132 - CcPI632755_02g017540.1 Cco02g1754 172511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1754 561 PANTHER CELL DIVISION PROTEIN KINASE 108 393 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco02g1754 561 CDD STKc_CDK9_like 109 393 - -
Cco02g1754 561 MobiDBLite consensus disorder prediction 44 63 - -
Cco02g1754 561 SMART serkin_6 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1754 561 MobiDBLite consensus disorder prediction 529 561 - -
Cco02g1754 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1754 561 MobiDBLite consensus disorder prediction 543 561 - -
Cco02g1754 561 MobiDBLite consensus disorder prediction 411 440 - -
Cco02g1754 561 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Cco02g1754 561 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1754 561 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524(InterPro)
Cco02g1754 561 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1754 561 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
Cco02g1754 561 SUPERFAMILY Protein kinase-like (PK-like) 104 398 IPR011009 -
Cco02g1754 561 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Cco02g1754 561 FunFam probable serine/threonine-protein kinase At1g54610 192 433 - -
Cco02g1754 561 MobiDBLite consensus disorder prediction 400 444 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1754 Cco-Chr2:30303719 Cco05g0679 Cco-Chr5:5590154 9.20E-225 dispersed
Cco03g0396 Cco-Chr3:4291563 Cco02g1754 Cco-Chr2:30303719 1.50E-185 transposed
Cco03g1703 Cco-Chr3:31767472 Cco02g1754 Cco-Chr2:30303719 6.80E-174 transposed
Cco03g1705 Cco-Chr3:31788962 Cco02g1754 Cco-Chr2:30303719 9.10E-58 transposed
Cco08g0124 Cco-Chr8:1967174 Cco02g1754 Cco-Chr2:30303719 2.80E-153 transposed
Cco08g0380 Cco-Chr8:8138575 Cco02g1754 Cco-Chr2:30303719 1.50E-116 transposed
Cco11g0075 Cco-Chr11:781104 Cco02g1754 Cco-Chr2:30303719 1.90E-161 transposed
Cco02g1754 Cco-Chr2:30303719 Cco06g0604 Cco-Chr6:6570251 4.00E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86579 PF00069 Pkinase 2.20E-67 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1754 K08819 - csv:101217497 1083.55