Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1779 ATGCACCTCAATGATGATGATGATGATGATGTTGACAGTAAGGATTCCGACGAGCGTTCGTTCGTCGATCGAAAAGTTTTGAGCACGATGGTGAGGGAGAAGAATTTCGAGTGTTTGGATCGATTTGGAGGTGTTGAAGGACTCACTAATCTTCTCGAAACAAACTCCAAGAACGGAATCATCGCAACGAAAGATGATCTAATTTCTAGAAGAAATACTTTCGGGACAAATGCTTATTTGAAGCTCCACGGTAGAAGCTTCATGAGTTTTGTTATCGAAGCCTTTAACGATACGACGATGATTGTTCTCTTGATATGTGCAGCGCTTTCCTTGGGATCTGGTATAAAACAACACGGTTGGGACGATGGATGGTACGACGGCGGCAGCATTGTCATCGCCATATTTCTTGTGGTTATCGTTTCCGCCGTTAGCAACTTCAAGCAGTCGAGGCAGTTTGAGAAGCTTTCAAATGAGAGAGACGACATAAAAATGGAGGTCACTAGAGCCAGTCGACGCAAACTTGTATCGATATTTGACATCGTCGTTGGAGACATTGTGTATTTGAAGATCGGAGATCAGATTCCTGCCGACGGAGTGTTCCTCGAAGGACATTTGCTGAAAGTCGACGAGTCTCACATGACTGGAGAGAGTGATCATGTTGAAGTAAATCATGGAAGTAATCCATTTTTGCTATCAGGAACCAAAGTGAGTGATGGTTTTGGTGTGATGATGGTTACTTCAGTGGGAATGAACACATCCTGGGGAGAAATGATGAGTTCAATCAGGCAGGAAGTTAATGAAGTTACTCCTTTGCAAGCTCGTTTAAACAAGATGACCATGGTGATTGGGAAGCTCGGGCTGACAGTCACCGTGCTCGTACTTCTTGTTCTTCTTATTCGCTATTTCACCAGGAGCACCGGCGAGTTCAATGGAAGCAAGACGAGGTTCAGTGATATCACGAATGCAGTTCTTGACATGGTTATGACTGCGGTTACGATCGTCGTCGTAGCAATACCGGAAGGTTTGCCTCTAGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCAGATAATGCAATGGCTAGGAAACTCTCTGCTTGTGAGACAATGGGCTCAGCAACAACAATTTGTACAGATAAAACTGGCACCCTTACTTTGAATGAGATGAAAGTTATAGAGTTTTGGATTGGGGAAGATGAAATTATTGACAAAAATGTTTCCAATTCAAGGATTGTGACTGAGGTTGTTGAATTGCTGCACCAAGCAGTTGGCTTGAATACAACTGGTAGTGTTCAAAGATCATCTTCTTCATTACCTCTAGAAATATTCGGGAGTCCGACTGAGAAAGCGATACTTTCTTGGGGCGTATTCGACTTGGATTTGAACCTACATGAATTGAAGAAGCAACATGAAACAATCCAAGTGGAGACTTTCAGTGCAGAGAAAAAGAGAAGCGGAGTTTCGGCAAGACGATACGGCGACAAGTTTATCCATACACATTGGAAGGGAGCAGCAGAGATGATATTGACAATGTGCTCATATTATTACAATAAACAAGGAACAGTTAGAGCCATTGATGACAAAGCAAGAAGACGATGGATTGCGACAATCACAACTATGGCAGGAAAAAGTCTCCGATGTAGAGCTGCAGGAGTGAACATCAAAATGGTAACGGGTGATAACTTACACACAGCAACAGCCATAGCAATTGAATGTGGAATACTAAATCCCGATGACAATACGAACAGTGACGAAGTTGTAGTCGAGGGTGTAAGATTTAGAAACTACACACCTGAGGAGAGAGTAGAAAAAATTGGGAACATCAAAGTAATGGCTAGATCTTCCCCATTTGACAAGCTTCTTATGGTACAATGCTTGAAGAATTTAGCCCATGTAGTGGCAGTCACAGGGGATGGAACAAATGATGCCCCTGCTCTTCATGAGGCAGACATTGGTCTTTCCATGGCGATTCAAGGAACTGAAGTGGCAAAGGAGAGTTCGGATATTGTCATCTTAGACGAAAACTTTACGTCAGTCGTCACGGTTTTGAAATGGGGAAGATGTGTTTACAACAACATCCAAAAGTTCATTCAATTTCAGCTCTCAGTGAATATTGCAGCATTGGTAATGAACTTCATTGCTGCTTTGTCTTCTGGCAAAGTCCCTTTAACAGCAGTTCAACTATTATGGGTGAATCTCATAATGGATACCGTGGGAGCTTTAGCCTTAGCCACTGAGCTACCCACCGATGATCTCATGGCGAAAACACCTGTCGGTCGAACCGAACCGTTGGTGATGAAAGTCATGTGGAGGAACCTCATTGCACAGGCTGTATATCAAGTGACAGTCTTGTTGGTTTTGGAATTTAAAGGAAGTGTCATCTTGAATGTAAATGGAAAGGTAAAGAACACACTCATTTTCAATACTTTTGTGCTATGCCAAATCTTCAATGAGTTCAATGCGAGGAAGATGGAGAAGAAGAATATATTTGAAGGAATAATACATAAAAGCAAGCTGTTTTTGGGAATAGTTGTGATAACTATGGGTTTTCAAGTGGTAATGGTGGAGCTTTTGGGAAGGTTTGCAAATACTGAGAAGTTGAATTGGGGCCAATGGGGAGTATGTATTGGCATTGCAGCTTTGTCTTGGCCAATTGGATGGCTTTCCAAGTTAATACCAGTTTCTGCCCTTCACTTTCCAAGGAGAACAAATTCAGCACCATAA 2733 42.26 MHLNDDDDDDVDSKDSDERSFVDRKVLSTMVREKNFECLDRFGGVEGLTNLLETNSKNGIIATKDDLISRRNTFGTNAYLKLHGRSFMSFVIEAFNDTTMIVLLICAALSLGSGIKQHGWDDGWYDGGSIVIAIFLVVIVSAVSNFKQSRQFEKLSNERDDIKMEVTRASRRKLVSIFDIVVGDIVYLKIGDQIPADGVFLEGHLLKVDESHMTGESDHVEVNHGSNPFLLSGTKVSDGFGVMMVTSVGMNTSWGEMMSSIRQEVNEVTPLQARLNKMTMVIGKLGLTVTVLVLLVLLIRYFTRSTGEFNGSKTRFSDITNAVLDMVMTAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMARKLSACETMGSATTICTDKTGTLTLNEMKVIEFWIGEDEIIDKNVSNSRIVTEVVELLHQAVGLNTTGSVQRSSSSLPLEIFGSPTEKAILSWGVFDLDLNLHELKKQHETIQVETFSAEKKRSGVSARRYGDKFIHTHWKGAAEMILTMCSYYYNKQGTVRAIDDKARRRWIATITTMAGKSLRCRAAGVNIKMVTGDNLHTATAIAIECGILNPDDNTNSDEVVVEGVRFRNYTPEERVEKIGNIKVMARSSPFDKLLMVQCLKNLAHVVAVTGDGTNDAPALHEADIGLSMAIQGTEVAKESSDIVILDENFTSVVTVLKWGRCVYNNIQKFIQFQLSVNIAALVMNFIAALSSGKVPLTAVQLLWVNLIMDTVGALALATELPTDDLMAKTPVGRTEPLVMKVMWRNLIAQAVYQVTVLLVLEFKGSVILNVNGKVKNTLIFNTFVLCQIFNEFNARKMEKKNIFEGIIHKSKLFLGIVVITMGFQVVMVELLGRFANTEKLNWGQWGVCIGIAALSWPIGWLSKLIPVSALHFPRRTNSAP 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30616701 30619433 - CcPI632755_02g017790.1 Cco02g1779 172536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1779 910 Gene3D - 241 395 - -
Cco02g1779 910 Pfam Cation transport ATPase (P-type) 435 518 - -
Cco02g1779 910 Gene3D - 651 900 - -
Cco02g1779 910 SUPERFAMILY Calcium ATPase, transduction domain A 164 260 IPR008250 -
Cco02g1779 910 FunFam Calcium-transporting ATPase 656 899 - -
Cco02g1779 910 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cco02g1779 910 PANTHER CATION TRANSPORTING ATPASE 25 552 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cco02g1779 910 Gene3D - 128 240 - -
Cco02g1779 910 Pfam E1-E2 ATPase 163 358 - -
Cco02g1779 910 NCBIfam HAD-IC family P-type ATPase 605 720 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g1779 910 NCBIfam HAD-IC family P-type ATPase 323 416 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g1779 910 SUPERFAMILY Calcium ATPase, transmembrane domain M 43 898 IPR023298 -
Cco02g1779 910 PRINTS P-type cation-transporting ATPase superfamily signature 553 563 - -
Cco02g1779 910 PRINTS P-type cation-transporting ATPase superfamily signature 639 658 - -
Cco02g1779 910 PRINTS P-type cation-transporting ATPase superfamily signature 663 675 - -
Cco02g1779 910 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cco02g1779 910 PRINTS P-type cation-transporting ATPase superfamily signature 209 223 - -
Cco02g1779 910 Pfam Cation transporting ATPase, C-terminus 724 895 IPR006068 -
Cco02g1779 910 Gene3D - 396 569 IPR023299 GO:0000166(InterPro)
Cco02g1779 910 PRINTS H+-transporting ATPase (proton pump) signature 639 655 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g1779 910 PRINTS H+-transporting ATPase (proton pump) signature 671 696 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco02g1779 910 Pfam Cation transporter/ATPase, N-terminus 43 110 IPR004014 -
Cco02g1779 910 FunFam Calcium-transporting ATPase 140 262 - -
Cco02g1779 910 SUPERFAMILY HAD-like 378 744 IPR036412 -
Cco02g1779 910 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0295 Cco-Chr2:2679359 Cco02g1779 Cco-Chr2:30616701 8.30E-95 dispersed
Cco02g1779 Cco-Chr2:30616701 Cco11g1185 Cco-Chr11:23152968 5.10E-257 dispersed
Cco02g1779 Cco-Chr2:30616701 Cco09g0712 Cco-Chr9:6483548 6.8e-310 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1779 K01537 - csv:101218531 1535.78