Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1789 ATGGCGGCTCGGAGGATATCCTCTCTCTTATCTCGTTCCCTTCCTTCTTCGTCGGCTCTCCTTTCCAAAGGTAGTAGGCCTTTCAGTGGCAGAACAACCACCAAATATAGCACTGCAGCTGCTGTTGAAGATCCTATTACTCCATCTGTGAAAGTGAATTACACCCAGTTGTTAATCAATGGACAGTTTGTGGATTCAGTCTCAGGAAAAACTTTTCCTACTTTGGATCCAAGGACTGGGGGAGTCATTGCAAATGTTGCTGAAGGTGATGCTAAAGATGTTGATCTTGCAGTTTCTGCTGCTCGCAAGGCGTTTGATGAAGGTCCTTGGCCTAGAATGACTGCTTATGAAAGATCGAAGATAATTTTGCGGTTTGCTGATTTGGTTGAAAAGCATGCCGATGAAGTTGCAGCACTGGAAACATGGGACAATGGTAAAACATATGAACAATCAGCAAAAATTGAAGTCCCAATGTTCGTACGCCTCTTTCGATACTATGGCGGATGGGCGGATAAGATCCATGGACTCACAGTGCCTGCTGATGGCTCGTATCATGTGCAGACATTGCATGAACCGATTGGTGTGGCGGGTCAGATCATTCCATGGAACTTCCCTCTGCTTATGTTTGCTTGGAAGGTTGGTCCAGCGTTAGCATGTGGGAATACTATCGTTCTGAAGACAGCTGAGCAGACACCTTTGTCTGCTCTCTTTGTGGCTAAGCTATTGCATGAGGCTGGACTTCCTGAGGGCGTTCTGAATATTGTTTCGGGTTATGGACCCACTGTTGGTGCTGCTATTGCCAGTCATATGGAAGTTGATAAGCTTGCTTTTACCGGATCAACTGAAACAGGGAAGATTGTACTTGAATTAGCTGCAAAAAGCAATTTGAAGCCAGTAACATTGGAGCTTGGTGGAAAATCCCCTTTCATTGTATGTGAGGATGCTGATGTAGACAAGGCTGTGGAGATGGCACACTTTGCTCTCTTCTTCAACCAGGGACAATGTTGCTGTGCTGGTTCTCGTACTTTCGTTCATGAAAAAGTATTCGACGAGTTTCTAGAAAAAGCAAGAAAACGAGCTGCGAACCGCGTTGTTGGTGATCCTTTCCTAGGTGGAATTGAGCAAGGTCCTCAGGTCGATGAAGAACAATTCAAAAAGATATTGAAATATATAAAACTTGGGATTGAAGGAGGAGCCACTCTTGAAGCAGGAGGAGAAAGGTTTGGTTCCAAGGGTTACTATGTCCAACCAACAGTTTTCTCAAATGTCAAGGATGACATGAAAATTGCACAGGAGGAGATTTTTGGTCCTGTACAAACAATCTTGAAATACAAAGAGATTGATGAGGTGGTAAGGAGGGCAAATGCTAGTCCTTATGGGCTGGCTGCTGGAGTGTTTACTCAAAATATCGACACAGCTAACCGGTTGACACGTGCGTTGAGAGTCGGGTCAGTATGGATCAATTGCTTTGATATATTTGATGCTGCAGTTCCTTTTGGAGGGTACAAGATGAGTGGACATGGGAGAGAAAAGGGAATTTACAGCCTTAGCAATTACCTGCAAGTGAAGGCTGTTGTGACTCCTTTGGAAAAGCCTGCTTGGCTTTAG 1608 44.65 MAARRISSLLSRSLPSSSALLSKGSRPFSGRTTTKYSTAAAVEDPITPSVKVNYTQLLINGQFVDSVSGKTFPTLDPRTGGVIANVAEGDAKDVDLAVSAARKAFDEGPWPRMTAYERSKIILRFADLVEKHADEVAALETWDNGKTYEQSAKIEVPMFVRLFRYYGGWADKIHGLTVPADGSYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALFVAKLLHEAGLPEGVLNIVSGYGPTVGAAIASHMEVDKLAFTGSTETGKIVLELAAKSNLKPVTLELGGKSPFIVCEDADVDKAVEMAHFALFFNQGQCCCAGSRTFVHEKVFDEFLEKARKRAANRVVGDPFLGGIEQGPQVDEEQFKKILKYIKLGIEGGATLEAGGERFGSKGYYVQPTVFSNVKDDMKIAQEEIFGPVQTILKYKEIDEVVRRANASPYGLAAGVFTQNIDTANRLTRALRVGSVWINCFDIFDAAVPFGGYKMSGHGREKGIYSLSNYLQVKAVVTPLEKPAWL 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30762913 30766338 + CcPI632755_02g017890.1 Cco02g1789 172546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1789 535 FunFam Aldehyde dehydrogenase, putative 497 523 - -
Cco02g1789 535 SUPERFAMILY ALDH-like 51 528 IPR016161 GO:0016491(InterPro)
Cco02g1789 535 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 49 527 - GO:0004029(PANTHER)
Cco02g1789 535 CDD ALDH_F2BC 52 527 - -
Cco02g1789 535 FunFam Mitochondrial aldehyde dehydrogenase 2 307 496 - -
Cco02g1789 535 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 59 330 - -
Cco02g1789 535 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491(InterPro)
Cco02g1789 535 Pfam Aldehyde dehydrogenase family 63 525 IPR015590 GO:0016491(InterPro)
Cco02g1789 535 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 301 308 IPR029510 GO:0016491(InterPro)
Cco02g1789 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 59 523 IPR016162 GO:0016491(InterPro)
Cco02g1789 535 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 494 IPR016163 GO:0016620(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1789 Cco-Chr2:30762913 Cco06g1894 Cco-Chr6:29133337 6.90E-246 dispersed
Cco02g1789 Cco-Chr2:30762913 Cco06g1872 Cco-Chr6:28937996 9.80E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1789 K00128 - csv:101202756 976.852