Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1800 ATGAATGCCAATACCCATGTGATGTTATCTCTTTTCTTCGTCTTGTTAGGGCTTTTCAATGGCGTTTACTCTGCTTCTGTTCTTGCTCCACCTCCAGATCCGCCATTGTTGTTGCGTGGTGGTTCTAACGATGAGGCCACTGATGATAATGGCCGAAAATGGACCTCCGATTCTAAATTTCTCGACCCTAAAAATACCTTAGCCGCACCTGCTGGATTTCAAGATCCGTCAATGACTTCGCAGGTTCCGTATACGGAAGCTAGGGTTTTCACAGCCGAGACGGCGTATAAGTTTCCGATAAAACCTGGTAATCGTTACTGGCTTCGACTGCATTTTTACCCTTCTACATACGGACCTCATGATTCTGCAAATTCTTATTTCACCGTCGCTGCGAATGATTTAATCCTTGTGAAGAATTTCAGTGCTTATCTCACATGTCAGGCCTTTACTCAGGCCTACATTATTCGCGAATTTACTCTCGCGGCTTCGGAATCTGAATCTTTGAATTTGACATTCACGCCTGTTTCTGGATTTGCTTTTGTTAATGGGATTGAATTGATTCAAATGCCTGAGATATTTGGGGAGGCTATAATGGTGGGTGCAAGGGAGCAGACAATGGATGTTACGGCGTCGAATATGCAGACGATGGTGAGATTGAACGTTGGCGGGGGCTACATTTCTCCCGCGAACGATTCCGGGCTGAGTAGAGCATGGTACGATGATTATCCTTATCTTTTTGGTGCTTCCGAGGGTGTTGTGATGGAAGCTTCTAAGAGATTGATGATTGATTATAAAGATATGCCAAAGTATATTGGGCCTGTGGAACTTTACAGGTCATTGAGATCAATGGGGTCAGCTAAAGATCTGAATGCGAATTACAATCTCACGTGGTTGTTTCCTAATATTGATCCCGGGTTTATGTATCTTGTGAGGTTGCATTTTTGTGATCTGTCTTTGAGTAGGCCAAATCAGGTGGTGTTTGATGTGTTCATCAACAATCAAACTGCGGAAGCAAATGGGATTGATGTGATAGCTTGGGCGGGCGCTAGGGGGGTTCCGAAATTCAGGGATTATGTTGTGTTTTCTAATGAAGCACCAACGATGCAGCAAATTTGGCTGGCAATGCATCCTAAGATGTTAGAGGCACCCGAATTTGCGGATGCTATGTTGAATGGGGTTGAGATATTCAAGCTCGAATCCGGGAAGAACTTGGCAGGGAAGAATCCTCAACCCTCCGCCTTTAGGATGAAGGTTGAGGCTGAAACAGAGAGAAATTTTGAAGCAAAGGGCAACAATGTTGAAGTGATTGGTGGAGCTGCAGGAGGTGCTGCTGCGTTCGTTGTGGTGGCACTTTGCTTTGCAGTGTACCAAAGGAAGAGTAGAATGCCAGGAACTGATTCACACACAACTAGCTGGTTACCGATCTATGGGAATTCACATTCGAATGGGAGCAAATCGACAGTGTCCGGGAAGAGTACGGCAAGTAATTTGGCTCAAGGTTTGGCTCGGCATTTCTCGCTTCCTGAGATTTTACATGCTACCAAAAACTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGGACAAAAGTTGCTATTAAAAGGTCGAACCCATCATCAGAACAAGGCATTCACGAGTTCCTTACAGAAATCGATTTGCTTTCTAAGCTGAGACACAAACATTTGGTGTCCTTGATTGGTTTTTGTGATGAAGAGAATGAGATGTGTTTAATTTATGATTATATGGGTTTAGGAACTCTGAGGGAACATTTGTATAAGACCAACAACAAAACTCGTCTCTCATGGAAGCAAAGGCTGGAGATTTGTATTGGAGCAGCTAGGGGACTTCATTACCTTCACACAGGAGCACAATATACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTTGGGCTCTCGAAAACTGGTCCAAACATGGCTAATGGTCATGTTAGCACAGTAGTAAAGGGTAGCTTTGGCTACTTAGATCCGGAGTACTTCCGAAGGCAACAACTGACTGAAAAATCTGATGTCTATTCATTTGGAGTTGTCCTGTTTGAAGTGTTATGTGCAAGGCCTGCTCTAAATCCAAGTCTGCCGAAGGAACAAGTTAGTCTTGCAGATTGGGCGTTGCACTGTAAACGCAAAGGATTTCTCGAGGATCTCATCGACCCCCACCTCAAAGGGAAAATCACCCCTGAAAGCTTGAAGAAGTTTGCAGATGCCGCTGAGAAATGTCTTGATGACCATGGAGCTGAGCGACCATCTATGGGTGATGTGTTATGGAACCTTGAATTTGCTCTCCAACTTCAGGAAAGTGCTGATGGTGGTTCAAGTCATAATTCGAGGATACACGAGGAAGATAGCCAGAGAAACCAAGACATGGCTGCACATTACAACAATCTCAGCCTTGGAAGTGAGCAAGAGTTACTTCAATCTAACGAACAAAACAGTACTACAATCTTCTCTCAACTTGTCCATCCGACAGGCCGATAA 2568 44.08 MNANTHVMLSLFFVLLGLFNGVYSASVLAPPPDPPLLLRGGSNDEATDDNGRKWTSDSKFLDPKNTLAAPAGFQDPSMTSQVPYTEARVFTAETAYKFPIKPGNRYWLRLHFYPSTYGPHDSANSYFTVAANDLILVKNFSAYLTCQAFTQAYIIREFTLAASESESLNLTFTPVSGFAFVNGIELIQMPEIFGEAIMVGAREQTMDVTASNMQTMVRLNVGGGYISPANDSGLSRAWYDDYPYLFGASEGVVMEASKRLMIDYKDMPKYIGPVELYRSLRSMGSAKDLNANYNLTWLFPNIDPGFMYLVRLHFCDLSLSRPNQVVFDVFINNQTAEANGIDVIAWAGARGVPKFRDYVVFSNEAPTMQQIWLAMHPKMLEAPEFADAMLNGVEIFKLESGKNLAGKNPQPSAFRMKVEAETERNFEAKGNNVEVIGGAAGGAAAFVVVALCFAVYQRKSRMPGTDSHTTSWLPIYGNSHSNGSKSTVSGKSTASNLAQGLARHFSLPEILHATKNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGIHEFLTEIDLLSKLRHKHLVSLIGFCDEENEMCLIYDYMGLGTLREHLYKTNNKTRLSWKQRLEICIGAARGLHYLHTGAQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMANGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPSLPKEQVSLADWALHCKRKGFLEDLIDPHLKGKITPESLKKFADAAEKCLDDHGAERPSMGDVLWNLEFALQLQESADGGSSHNSRIHEEDSQRNQDMAAHYNNLSLGSEQELLQSNEQNSTTIFSQLVHPTGR 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 30842451 30845018 + CcPI632755_02g018000.1 Cco02g1800 172557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1800 855 Gene3D - 211 398 - -
Cco02g1800 855 Gene3D - 39 190 - -
Cco02g1800 855 PANTHER OS07G0166700 PROTEIN 505 796 IPR045272 GO:0004672(PANTHER)|GO:0004714(InterPro)|GO:0005886(PANTHER)|GO:0006468(InterPro)|GO:0009506(PANTHER)|GO:0046777(PANTHER)
Cco02g1800 855 FunFam FERONIA receptor-like kinase 35 190 - -
Cco02g1800 855 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Cco02g1800 855 ProSiteProfiles Protein kinase domain profile. 517 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1800 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 638 650 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1800 855 ProSitePatterns Protein kinases ATP-binding region signature. 523 545 IPR017441 GO:0005524(InterPro)
Cco02g1800 855 FunFam FERONIA receptor-like kinase 211 399 - -
Cco02g1800 855 SUPERFAMILY Protein kinase-like (PK-like) 502 786 IPR011009 -
Cco02g1800 855 FunFam receptor-like protein kinase FERONIA 479 592 - -
Cco02g1800 855 SMART serkin_6 517 791 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1800 855 FunFam Receptor-like protein kinase FERONIA 593 808 - -
Cco02g1800 855 CDD STKc_IRAK 523 789 - -
Cco02g1800 855 Gene3D Transferase(Phosphotransferase) domain 1 593 815 - -
Cco02g1800 855 Pfam Protein tyrosine and serine/threonine kinase 520 781 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1800 855 Pfam Malectin-like domain 43 397 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1800 Cco-Chr2:30842451 Cco11g1892 Cco-Chr11:31631667 7.10E-176 dispersed
Cco02g1800 Cco-Chr2:30842451 Cco04g0807 Cco-Chr4:23394568 6.10E-236 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86582 PF12819 Malectin_like 8.50E-33 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1800 - - - 0.0