Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1815 ATGGCTAACGCCAAAAATTCTCCCATTGCGGCTTCTGCTTCTGCAAGCAACCGGCCATCAGGTGATACTGGAAATTTTCACTCGTTAGAATGCTTCCCCAGACTTAGAGGGAAGAAAATGGTTAGCAATAGTGTTCATTCAGCTTTGGCATGTGATGACATCCTCACTGAAATCCTCCTCCGTTTGCCAGAGAAATCTGTTTTCAAATTTATTCTTGTGTCCAAAAGATGGCTATCCTTGATTTGTAATTTTTCTTTCCGTCGTAGTTATGAAAAACAATGGGGCACACACACTCGTCTTTTTGGCTTTTTTGTATGCAATTTTCTTTACATTGACAGACCACAAGATGGGGTGAGGCGCCCGCGGCATGAGCCTGCTCTACCTCTACTTTCAACTTGTAAAGAGAGTGATGATCTAATGTCATCTGGAATCTTAAGGAAACTTGGCTATTTTATTGACTACTCTGATGGACTTCTTCTCTGTGGCCGGCACCCTAGACATTATTATGTCTGGGATTCTGTCACCAAGTATCGATGCCAACTTCCTCAACCTCAAAAGCACTACAAATATCTATGTACCGCATTCATGACAGAAGACCCTGGTGAAGGTGGCGGAGATATCGTATATAGAGTTGTTCGGGCAAACTGTGAATGCAGAGTCGATGTAATTAACACCATCTCCATAGAGACTTTCTCCTCATTGACTTGGACATGGAAGCAATCCACTCTTGTTTGTTCTTCAGATTTCGCTTTGAGCCCATGGACTGTGGGTACTGTGATTAATGGAGTTATCCACTGGTTTGGAACATATCGAAGTTTAGCCATTTATGATCCCGGATTTGGAGAAAGGCGCATAACTTCAATCAAGCTACCGGTCGGTCAGCTGACACATGACTATGAGGACTCCATTTTAGGAGTGTCATCTGATGGGCTTTTGCAGTATGGTCAAAGTGGGAAGCTTGGATTAGAGACATGGGTTCTCTACAAGGAACAAGATGACTCCTCATCACCATATACCATGGATGCTCATTGCGAGTACCAGTGGAAGTTACGACATAAATTAAACTACAAAGACATGTGGAAGCAGAACCCAAATTCAGGTATTCGCTCTAAAGAACCTCAAATATTATCGTTCATTCGTCGAAACTCCGACTCTGTTTTCATTAGGTTGGGATCAAACATCTATCACTGTAACATCAGAAGCAAAACACTGGAAGTGATTCCCTACCATTGTGATGCTCTTTCTATTCCATGGGATTTTTGTAAAGTAGTGCCTTACTTTCAAAAGATCTGGCCCCATTCCCTTTTTCGTATCCCCCCAAACACAGTTAAGCCTTATGCTTCATTTTCTGGAGGTACTCCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAAGATCCAGAAGTTGCTTGGCTTGATGGACAGGTATCCAAGATTACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTATCCAAAATATACCCCAAAGATATGGAGGCTCCAGCTGGTGGGGTTGATGACATGACGAAGCTATCTTACTTGCACGAGCCTGGAGTTTTACAAAATTTAAAAATTCGATATGAACTCAATGAAATCTATACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATAGTCATATGATGCAACAATACAAAGGAGCACCATTTGGAGAACTGAGTCCTCATGTTTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATCAATGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAAATGCTCATGCGGTACCTTGCATTTTTAGGTGGCCGGGCGGCTACTGAAGGACGGACAGTTGAGCAGCAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCTAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCGGGAGCAGCTATCCGAACTTACCTCCTTGAGAGATCTCGTGTTTGCCAAGTTTCTGATCCTGAGCGCAATTATCATTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAATACAAGCTGGGAAATCCCAGGTCATTTCATTATCTAAATCAATCAAATTGCTATGAGCTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATGTTGTTGGAATAAGTGCTAAGGAGCAGGAAGCAATCTTTAGGGTTGTTGCTGCAATTCTTCATCTTGGAAACATTGAATTTACTAAGGGAAAAGAAGTTGATTCATCAGTTCCAAAAGATGACAAGGCCAAGTTCCATCTTAAAATGACTTCAGAGCTTCTCATGTGTGATAATGCTGGCCTTGAAGATGCATTATGCAAGCGTGTCATGATCACCCCTGAAGAAGTGATAAAACGTAGCTTGGATCCTCAAAGTGCAGCTGTTAGTCGTGATGGTTTAGCCAAAACTATATATTCTCGACTTTTTGACTGGCTGGTTGATAAAATTAATGTCTCAATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAACGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACGAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTCGACAACCAAGATGTGTTAGACCTCATTGAAAAGAAACCCGGTGGAATTGTGGCTCTCCTTGATGAAGCTTGCATGTTTCCAAAGTCAACACATGAGACATTTGCTAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTTATAAAGCCAAAACTTTCTCGAACAGATTTTACCATTGCTCATTATGCTGGAGAGGTTTTATATCAATCTGAACAGTTTTTGGACAAAAACAAGGATTACGTTGTTCCTGAACATCAGGATTTGTTAGGTGCATCCAAATGTCCATTTGTTGCTGGCCTTTTCCCCCCTCTAAAAGAGGAATCTGCAAAATCTTCCAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAACAGTTAATGGAGACACTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCTAACAACCTCTTGAAACCTGCCATCTTTGAGAATGTCAATATTATGCAACAACTGCGTTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCTGGGTACCCTACTCGCCGTGCATTCTTTGAATTCATTAACCGATTTGGAATTTTAGCTCAAGAATCCTTAGAAGGAAACTACGATGAAAAAACTGTGTGCAAAAAGATATTAGAAAAGCAGGGACTTAAAGGGTTTCAGATAGGTAAGACAAAAGTATTCCTGAGGGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTATTGAGTAATGCAGCAAAGACTATCCAACGGCGCACACGAACCCATATTGCTCGTAAACAGTTCATCGCATTACGAAAGGCAACCATACACGTGCAATCTAGATGGAGAGGAAAACTGGCTTGCAAACTTTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAAAATGCTCGAAGATTTCATGCGAGAACAGCCTACAAAAGACTACAAACCTCAGTGCTTTATGTGCAAACTGGTTTAAGGGCAATGGCAGCTAGGAACGAATTCAGATTTAGGAAGCAGACAAAGGCGGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCATACTATAAGAAACTTCAGAGAGGCTCAATTATTGCACAATGTAGATGGAGGGGAAAAGTTGCTAGAAAAGAACTGAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGACAAGTTAGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAGTTAGAAAAACGCCTAAGGACGGACCTGGAAGAGGCAAAAGCTCAGGAGATAGCGAAATTACAAAATTCTTTGCAAGAACTGCAGACTAAAGTTGACGAAACTAACTCATTGCTTGTAAAGGAGCGAGAGGCTGTGAAGAAGGCTGTTGAAGAAGCACCTCCTGTTATACAAGAAACCCAAGTTCTGGTTGAAGATACCAAGAAAATTGATGCTTTGACAACAGAAGTAGAAAGCTTAAAGACCTCACTGGAGACGGAGAAAAACAGAGCTGATGAATATGAGAAAAAATGTAGTGAAGTAGAACAGTCTAGAGAAGAACAACGTAAAAAGTTAGAAGATACAGAGAAAAAAGCTCATCAGCTCCAGGAGTCATTGACCAGGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAACTCCTCTCAGGACGGTCTAGATCAATTCTTCAGAGAGGTGCTGAAAGTGGTCATTACGGAGGGGAAGGGAGGACACCTTTGGATCTTCACAGCCCCTCTATTAACCAAAGGGATTCAGAAGTAGAGGATAAACCTCAAAAATCACTTAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATCAGATGTATTGCACAGCACCTTGGCTTTGCAGCAAACAGACCTATTGCTGCTTGTATCATCTACAAGTGCCTGCTTCAGTGGAGGTCATTTGAAGTCGAACGCACCAGTGTGTTTGATAGGATAATTCAAACTATAGGCCATGCAATTGAGACTCAGGATAACAATGACGTCTTGGCCTATTGGTTATCCAACGCTTCAACGCTTCTCTTACTGCTTCAGCGTACATTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCGCAGCGTCGGAGATCGTCAGCTACACTATTTGGGAGGATGACTCAAAGTTTCCGAGGAGCTCCACAAGGAGTCAATCTATCCTTAATCAATGGTGGAACTAGTGGTGGAGTGGACACTTTAAGGCAAGTTGAAGCGAAGTACCCTGCTTTGCTTTTTAAGCAGCAGCTGACAGCCTATGTAGAGAAAATTTATGGAATGATTAGAGATAATCTGAAGAAAGAAATTTCTCCATTGCTTGGATTGTGCATCCAGGCACCAAGAACATCAAGGGCAAGTTTGGTGAAGGGATCTTCTCGTTCTGTTGCCAACACGGAGGCCCAGCGTGCCTTAATTGCTCACTGGCAAGGAATCGTGAAGAGCCTTGGAAACTTCTTAAACACCTTAAAAGCAAATCATGTACCCCCATTTTTGGTTCGCAAAGTCTTCATTCAAATATTTTCTTTCATCAACGTTCAACTATTCAACAGTCTTCTATTACGACGAGAATGTTGTTCATTTAGCAATGGCGAATACGTCAAAGCTGGGCTGTCTGAATTAGAGCATTGGTGCTATAAAGCTACTGATGAGTATGCAGGTTCTGCTTGGGACGAGCTAAAGCATATTAGACAAGCGATCGGGTTTCTGGTCATTCATCAGAAGCCAAAGAAGACACTAGATGAAATAAGTCACGATCTGTGTCCGGTACTAAGTATACAGCAGCTGTATCGTATAAGTACGATGTACTGGGACGACAAATATGGCACTCATAGTGTTTCACCTGATGTTATATCCAATATGAGGGTGTTAATGACCGAAGATTCGAACCATGCAATAAGCAATTCATTTCTATTGGATGACGATTCAAGCATTCCATTCTCAGTTGATGATTTATCAAAGTCTATGGAACAAATAGACATCGGAGACATCGAACCGCCACCACTGATTCGGGAGAACTCGGGCTTTAGTTTCTTGTTACCACGAACAGACTAA 5937 41.6 MANAKNSPIAASASASNRPSGDTGNFHSLECFPRLRGKKMVSNSVHSALACDDILTEILLRLPEKSVFKFILVSKRWLSLICNFSFRRSYEKQWGTHTRLFGFFVCNFLYIDRPQDGVRRPRHEPALPLLSTCKESDDLMSSGILRKLGYFIDYSDGLLLCGRHPRHYYVWDSVTKYRCQLPQPQKHYKYLCTAFMTEDPGEGGGDIVYRVVRANCECRVDVINTISIETFSSLTWTWKQSTLVCSSDFALSPWTVGTVINGVIHWFGTYRSLAIYDPGFGERRITSIKLPVGQLTHDYEDSILGVSSDGLLQYGQSGKLGLETWVLYKEQDDSSSPYTMDAHCEYQWKLRHKLNYKDMWKQNPNSGIRSKEPQILSFIRRNSDSVFIRLGSNIYHCNIRSKTLEVIPYHCDALSIPWDFCKVVPYFQKIWPHSLFRIPPNTVKPYASFSGGTPVNIIVGSHVWIEDPEVAWLDGQVSKITGQEAEIEASNGKKVVAKLSKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHLYDSHMMQQYKGAPFGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRAATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPRSFHYLNQSNCYELVDVSDAHDYLATRRAMDVVGISAKEQEAIFRVVAAILHLGNIEFTKGKEVDSSVPKDDKAKFHLKMTSELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFIKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEHQDLLGASKCPFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAQESLEGNYDEKTVCKKILEKQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKLFKNLKREAAAVKIQKNARRFHARTAYKRLQTSVLYVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYKKLQRGSIIAQCRWRGKVARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKLQNSLQELQTKVDETNSLLVKEREAVKKAVEEAPPVIQETQVLVEDTKKIDALTTEVESLKTSLETEKNRADEYEKKCSEVEQSREEQRKKLEDTEKKAHQLQESLTRLEEKLSNLESENQVLRQQAVSMAPNKLLSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSATLFGRMTQSFRGAPQGVNLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSSIPFSVDDLSKSMEQIDIGDIEPPPLIRENSGFSFLLPRTD 1978
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 31011488 31030100 - CcPI632755_02g018150.1 Cco02g1815 172572
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1815 1978 SMART iq_5 1303 1325 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 SMART iq_5 1255 1277 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 SMART iq_5 1232 1254 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 SMART iq_5 1280 1302 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 SMART iq_5 1207 1229 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 SMART iq_5 1184 1206 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 FunFam Class V myosin 889 1024 - -
Cco02g1815 1978 Gene3D - 702 760 - -
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1233 1260 - -
Cco02g1815 1978 Gene3D - 889 1073 - -
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1185 1212 - -
Cco02g1815 1978 Coils Coil 1425 1501 - -
Cco02g1815 1978 FunFam unconventional myosin-Va 1187 1235 - -
Cco02g1815 1978 Gene3D - 1117 1180 - -
Cco02g1815 1978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 488 1235 IPR027417 -
Cco02g1815 1978 FunFam Myosin 2 762 877 - -
Cco02g1815 1978 Pfam F-box domain 52 88 IPR001810 GO:0005515(InterPro)
Cco02g1815 1978 FunFam unconventional myosin-Va 1284 1331 - -
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1256 1285 - -
Cco02g1815 1978 MobiDBLite consensus disorder prediction 1544 1560 - -
Cco02g1815 1978 ProSiteProfiles Dilute domain profile. 1609 1921 IPR002710 -
Cco02g1815 1978 Pfam IQ calmodulin-binding motif 1187 1205 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 Pfam IQ calmodulin-binding motif 1282 1302 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 Pfam IQ calmodulin-binding motif 1235 1254 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 Pfam IQ calmodulin-binding motif 1209 1228 IPR000048 GO:0005515(InterPro)
Cco02g1815 1978 Coils Coil 1327 1400 - -
Cco02g1815 1978 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g1815 1978 Pfam DIL domain 1797 1900 IPR002710 -
Cco02g1815 1978 FunFam Myosin heavy chain 702 757 - -
Cco02g1815 1978 Pfam Myosin N-terminal SH3-like domain 459 502 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 SUPERFAMILY F-box domain 52 100 IPR036047 GO:0005515(InterPro)
Cco02g1815 1978 SMART MYSc_2a 507 1183 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 Pfam Myosin head (motor domain) 514 1170 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 Gene3D Myosin VI head, motor domain, U50 subdomain 762 1051 - -
Cco02g1815 1978 CDD MYSc_Myo11 526 1170 IPR036018 -
Cco02g1815 1978 CDD MyosinXI_CBD 1560 1944 IPR037975 GO:0007015(InterPro)
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1208 1237 - -
Cco02g1815 1978 Gene3D Kinesin motor domain 515 1112 IPR036961 -
Cco02g1815 1978 Gene3D - 1235 1282 - -
Cco02g1815 1978 Gene3D - 1283 1332 - -
Cco02g1815 1978 Gene3D - 1183 1234 - -
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1304 1333 - -
Cco02g1815 1978 SMART DIL_2 1796 1903 IPR002710 -
Cco02g1815 1978 PRINTS Myosin heavy chain signature 879 907 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 PRINTS Myosin heavy chain signature 599 624 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 PRINTS Myosin heavy chain signature 542 561 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 PRINTS Myosin heavy chain signature 932 960 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 PRINTS Myosin heavy chain signature 646 673 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 ProSiteProfiles Myosin motor domain profile. 512 1182 IPR001609 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 PANTHER MYOSIN 462 1920 - GO:0000146(PANTHER)|GO:0005737(PANTHER)|GO:0007015(PANTHER)|GO:0009860(PANTHER)|GO:0015629(PANTHER)|GO:0030050(PANTHER)|GO:0031982(PANTHER)|GO:0051015(PANTHER)
Cco02g1815 1978 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1235 1333 IPR027417 -
Cco02g1815 1978 ProSiteProfiles IQ motif profile. 1281 1308 - -
Cco02g1815 1978 MobiDBLite consensus disorder prediction 1523 1561 - -
Cco02g1815 1978 MobiDBLite consensus disorder prediction 1439 1479 - -
Cco02g1815 1978 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 458 507 IPR004009 GO:0003774(InterPro)|GO:0005524(InterPro)|GO:0016459(InterPro)
Cco02g1815 1978 FunFam unconventional myosin-Va 1236 1283 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1815 Cco-Chr2:31011488 Cco03g1583 Cco-Chr3:30448169 0.00E+00 dispersed
Cco02g1815 Cco-Chr2:31011488 Cco06g0132 Cco-Chr6:1302224 0.00E+00 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1815 K10357 - csv:101206606 2911.32