Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1816 ATGATGGCGAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCGGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACGGTGGACCCGTTAACAGCGGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGCGATGAACCTAAAGAAGGAGCTGTCGAAGTTCCAACGCGCCGTCCTCGTGGCCGTCCACCGGGCTCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCGCGGAAAGCGTTGCTCAATTTGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCCGGACCAGCCCCACCCGGGTCAACTGGACTAACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGGCCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAGGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGAGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATACCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGAGGCCGGCCGTCGTTTTAA 888 56.53 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNGGPVNSGGVDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAIPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31046943 31048012 + CcPI632755_02g018160.1 Cco02g1816 172573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1816 295 MobiDBLite consensus disorder prediction 1 95 - -
Cco02g1816 295 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cco02g1816 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 211 IPR005175 -
Cco02g1816 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 293 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco02g1816 295 MobiDBLite consensus disorder prediction 14 42 - -
Cco02g1816 295 Gene3D - 99 225 - -
Cco02g1816 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cco02g1816 295 CDD DUF296 99 182 IPR005175 -
Cco02g1816 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cco02g1816 295 PIRSF ESCAROLA 12 295 IPR014476 GO:0003680(InterPro)
Cco02g1816 295 MobiDBLite consensus disorder prediction 221 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1816 Cco-Chr2:31046943 Cco07g0348 Cco-Chr7:3666747 3.10E-70 dispersed
Cco02g1816 Cco-Chr2:31046943 Cco02g1819 Cco-Chr2:31083734 3.80E-20 proximal
Cco02g0337 Cco-Chr2:3060265 Cco02g1816 Cco-Chr2:31046943 4.90E-59 transposed
Cco02g1816 Cco-Chr2:31046943 Cco05g0522 Cco-Chr5:4163597 4.40E-77 wgd
Cco02g1816 Cco-Chr2:31046943 Cco06g0700 Cco-Chr6:7843527 4.00E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1816 - - - 0.0