Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1819 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAACACCACCATCAGAGTCCCACCACATCGCCGACCAATGGCCTTTTACCACCCACCCACCACCTCTCCTCCGCCGCCGCCGCCTCCGACGCCGGCCCTCATGTCGTATACCCTCACTCTGTCCCTTCCGCCGCCGTGTCCTCGTCTCCTCTCGAGCCCGCACGCCGGAAGAGAGGCCGGCCGAGGAAGTACGGCACGCCGGAAGAAGCTTTAGCGGCTAAAAAAGCTGCTACGGCGTCGTCTCACTCTTCGTCCTCTAAGGCTAAGAAGGAACTCGCTTCTTCTTCTTCCCTTAATGCCGTTTCCGCTTCTTCTTCCTTCTCCGCGCCTTCCAAAAAATCTCAGTTGGCTGCACTTGGTAATGCAGGCCAAGGTTTTGCGCCACATGTTATTAATGTGGCAGCTGGTGAGGATGTGGGCCAGAAAATTATGATGTTTATGCAACAATGTAAGCGGGAAATTTGTATCCTTTCTGCATCTGGTTCAATCTCCAATGCATCTCTCCGTCAGCCAGCCGCATCCGGAGGCAATATTGCATATGAGGGTCGTTTTGAGATTGTTTCGTTATGCGGATCTTATGTACGAACTGACCTCGGAGGAAAGACGGGTGGTCTTAGTGTATGTCTATCAAGTGCTGAAGGCCACATCATAGGAGGGGGAGTTGGTGGACCGTTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGAACCTTCGTAATCGACCCCAAGAAGGAAGTTGGTGGTGGTAAAGGCGATGCATCTGCTGGCAAGTTGTCCTCACCTATTGGTGGGACATTGATGTCAAATCTACGCTATGGCTCCAACATTGACTCGGGAGGTAATCATGTAAGGGGAAATGATGAACACCAAGGTCTTGGAGAGAGTCATTTTTTGCTTCAGCCCCGGGGAGTGAATCTGACATCACCGCGATCAACAGATTGGAGAACGGGTCTGGATGCCACAAACACTGCTTATGATTTGACAGGAAGAACAGGCCATCATTCTCCCGAAAATGGAGATTACGATCAGATTCCCGATTGA 1086 51.75 MEPNENQLSSYFHHHQHHHQSPTTSPTNGLLPPTHHLSSAAAASDAGPHVVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELASSSSLNAVSASSSFSAPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMMFMQQCKREICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSSAEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEVGGGKGDASAGKLSSPIGGTLMSNLRYGSNIDSGGNHVRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNTAYDLTGRTGHHSPENGDYDQIPD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31083734 31089738 - CcPI632755_02g018190.1 Cco02g1819 172576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1819 361 Gene3D - 143 262 - -
Cco02g1819 361 ProSiteProfiles PPC domain profile profile. 137 278 IPR005175 -
Cco02g1819 361 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 267 IPR039605 GO:0003680(InterPro)
Cco02g1819 361 CDD DUF296 143 253 IPR005175 -
Cco02g1819 361 MobiDBLite consensus disorder prediction 339 361 - -
Cco02g1819 361 MobiDBLite consensus disorder prediction 1 105 - -
Cco02g1819 361 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 253 IPR005175 -
Cco02g1819 361 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 254 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1819 Cco-Chr2:31083734 Cco08g1074 Cco-Chr8:22542348 1.50E-39 dispersed
Cco02g2338 Cco-Chr2:35805022 Cco02g1819 Cco-Chr2:31083734 1.30E-07 dispersed
Cco02g1816 Cco-Chr2:31046943 Cco02g1819 Cco-Chr2:31083734 3.80E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1819 - - - 0.0