Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1831 | ATGGCGGATAAAGGCAGAGACGGCGGCCACTCGAGTTTACTCGACGGGAAGTACGAATTAGGCCGTCTTCTAGGGCATGGAACCTTCGCTAAGGTTTATCATGCTCGGAATCTGCGAACCGGGAAGAGCGTCGCGATGAAAGTGGTCGGGAAGGAGAAGATCATCAAAGTCGGCATGACGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAATGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTCGCGATGGAGTTCGTTAGAGGCGGTGAACTGTTCTCCAAAATCGCGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTAATCTCTGCAATCGATTTCTGCCATAGCCGTGGAGTTTACCACCGTGATCTGAAACCGGAAAACCTCCTACTCGACGAAGACGGTAACCTCAAGGTCACCGACTTCGGCCTCACCGCCTTCTCAGAGCACTTGAAGCAAGACGGATTGTTGCATACAACGTGTGGAACTCCGGCGTACGTCGCGCCGGAGGTCATCGGAAAGCAAGGATACGACGGCGCGAAGGCCGATCTGTGGTCTTGTGGAGTCATCCTTTACGTTCTTCTCGCCGGATACCTTCCATTCCAGGATGACAACATGGTGGCGATGTACCGGAAGATTTACAGAGGCGACTTCAAGTGTCCGCCGTGGTTCTCTCCCGAAGCCCGTCGGCTAATCACGAAGCTTCTAGATCCTAATCCAGTGACCAGAGTCGGTATCGCGAAGATTACATCGTCATCATGGTTCAAGAAATCGGTACCCAAGACTCTGAGTACGAAGGAGGAGCAAGAACAAGCAGAGGAGAATTTCACGAAATCAAAGCCACCGGCGGAAACATTGAACGCGTTCCACATAATATCTCTATCGGAAGGTTTTGATCTGTCGCCGTTGTTCGAGGAGAAGAAAAGGGAGGAGAAAGAGGAGATGAGATTCGCGACTTCGTCGCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGTCAGTGAAGTTCGATGTGAAGAAGAGCGAATCGTGGGTTCGATTGCAGGGGCAAGAGAAAGGGAGAAAGGGGAAACTGACGATCGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGATACTTTGGAGTATAATCAGTTCTGCAGGAAGGAGCTCCGGCCGGCGTTGAAGGACATTGTTTGGACTTCTCCGACGGGAAACTCGACCCCAGCTTGA | 1302 | 51.38 | MADKGRDGGHSSLLDGKYELGRLLGHGTFAKVYHARNLRTGKSVAMKVVGKEKIIKVGMTEQIKREISVMKMVKHPNIVELHEVMASKSKIYFAMEFVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFKCPPWFSPEARRLITKLLDPNPVTRVGIAKITSSSWFKKSVPKTLSTKEEQEQAEENFTKSKPPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFATSSPASSVISKLEEVAKSVKFDVKKSESWVRLQGQEKGRKGKLTIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTSPTGNSTPA | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31197693 | 31198994 | + | CcPI632755_02g018310.1 | Cco02g1831 | 172588 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1831 | 433 | CDD | CIPK_C | 304 | 419 | - | - | |
Cco02g1831 | 433 | FunFam | Non-specific serine/threonine protein kinase | 10 | 97 | - | - | |
Cco02g1831 | 433 | Gene3D | Kinase associated domain 1, KA1 | 299 | 424 | - | - | |
Cco02g1831 | 433 | SMART | serkin_6 | 18 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1831 | 433 | ProSiteProfiles | NAF domain profile. | 298 | 322 | IPR018451 | GO:0007165(InterPro) | |
Cco02g1831 | 433 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 97 | - | - | |
Cco02g1831 | 433 | Pfam | NAF domain | 301 | 360 | IPR004041 | GO:0007165(InterPro) | |
Cco02g1831 | 433 | Gene3D | Transferase(Phosphotransferase) domain 1 | 98 | 298 | - | - | |
Cco02g1831 | 433 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 8 | 416 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco02g1831 | 433 | CDD | STKc_SnRK3 | 17 | 271 | - | - | |
Cco02g1831 | 433 | ProSiteProfiles | Protein kinase domain profile. | 18 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1831 | 433 | FunFam | Non-specific serine/threonine protein kinase | 9 | 298 | - | - | |
Cco02g1831 | 433 | ProSitePatterns | Protein kinases ATP-binding region signature. | 24 | 51 | IPR017441 | GO:0005524(InterPro) | |
Cco02g1831 | 433 | FunFam | Non-specific serine/threonine protein kinase | 282 | 423 | - | - | |
Cco02g1831 | 433 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 136 | 148 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g1831 | 433 | Pfam | Protein kinase domain | 18 | 272 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1831 | 433 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 290 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1831 | Cco-Chr2:31197693 | Cco06g1418 | Cco-Chr6:24685348 | 6.30E-213 | dispersed | |
Cco02g1831 | Cco-Chr2:31197693 | Cco05g0496 | Cco-Chr5:3962123 | 3.60E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86583 | PF00069 | Pkinase | 8.30E-73 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1831 | - | - | - | 0.0 |