Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1832 ATGAAGCTCACGCGCTTCATCTTCCTCTATAAAACCTCAGTATTCCCACCTTCCATTGCTTCCTCACTCACTTCTTTGTTCATTTCTCGCCGGACTGATATGAGACTCACCAACTCCCTCCCGGACCTCCATAGCCACCGCCATAACCACCCGCCGGAGACCGAAGCCTCTCAACTCCATCACCACCAACTTCAGACCTCCCTCTTCCATCCCTCTTCCTTCTCTTCCGACGATTTCCTCGACCAAATCCTCTCCGCCGCCCCTCCTCCCTGGGAACTCCCCGTCGGCCTCCCAAATCCTCACTCCGACCTCCCTCCCCAACCACTTCCGTCATCTAGTCCCGACAATGTCGCGTTTCAGATCGGCGACACAACTCCGGCGGCCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTGCTCATGTCGAGAGGAATCACCGCCGCCGATGATTCCGGTCTCCTTCCAATGCCTGGTAACGACGTCGTTGAAATAGAAGGCTCTTCGTCTTTCAAATGCCCTAATCCGATTGATCACGGTTCCATCATTCCCTCTCTCTTCAACGAATTCGCCGGATTTCTGAACGCCTCCGGTTCCGGCCATAACCAGAATCAATCTCAGGGGAACTCAAACTCTCAGAAACAGAACTTCGGAGCTCCGGTATCAGTCAGCAGTCCACCACCGGCAGGTCCTAACTCCGGCGTTGGTGCTGCACCACCGGCTCAGCCGCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCATAGTATAGCAGAAAGATTACGAAGAGAGCGAATTGCGGAGAGAATGAAAGCACTTCAAGAACTGGTTCCCAACGCCAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTATGTAAAGTTTCTCCAGCTTCAAGTCAAAGTTCTGAGTGTCAGCAGGTTGGGCGGTGCCACTGCAGCCATGCCTTCCCTTCAACCTGATCTTTCCACTGAGGGTGGCACTGAGTGCAACCAGTCCAACGGAACCGGTGGGGCCGGCGGACAGGCTTCAGCCGAAGTTCCGTCGAGTAACGACGCGATGACGGTGACGGAACATCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTTTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCCGCCGCCACGTGTCACAGCCGCCCAACCACGACGTCGAAGGTCAGAGGAGATGCTCCCACCTCTCCCAGTCTGTCGGCGTTGACCGTTCAGTCAACTACCTTGGGTAACGGCACGGTGGACAGAACCGTCAGAGACTCCGTCTCCGTTTCACGGCCGCCGTGA 1356 55.46 MKLTRFIFLYKTSVFPPSIASSLTSLFISRRTDMRLTNSLPDLHSHRHNHPPETEASQLHHHQLQTSLFHPSSFSSDDFLDQILSAAPPPWELPVGLPNPHSDLPPQPLPSSSPDNVAFQIGDTTPAAKMAMALLQQQLLMSRGITAADDSGLLPMPGNDVVEIEGSSSFKCPNPIDHGSIIPSLFNEFAGFLNASGSGHNQNQSQGNSNSQKQNFGAPVSVSSPPPAGPNSGVGAAPPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLQPDLSTEGGTECNQSNGTGGAGGQASAEVPSSNDAMTVTEHQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPTTTSKVRGDAPTSPSLSALTVQSTTLGNGTVDRTVRDSVSVSRPP 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31226410 31232169 - CcPI632755_02g018320.1 Cco02g1832 172589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1832 451 SMART finulus 258 307 IPR011598 GO:0046983(InterPro)
Cco02g1832 451 FunFam Transcription factor bHLH66 249 314 - -
Cco02g1832 451 Gene3D - 247 309 IPR036638 GO:0046983(InterPro)
Cco02g1832 451 MobiDBLite consensus disorder prediction 405 451 - -
Cco02g1832 451 MobiDBLite consensus disorder prediction 40 57 - -
Cco02g1832 451 MobiDBLite consensus disorder prediction 322 355 - -
Cco02g1832 451 MobiDBLite consensus disorder prediction 196 260 - -
Cco02g1832 451 MobiDBLite consensus disorder prediction 196 221 - -
Cco02g1832 451 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 252 301 IPR011598 GO:0046983(InterPro)
Cco02g1832 451 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 250 310 IPR036638 GO:0046983(InterPro)
Cco02g1832 451 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 396 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco02g1832 451 MobiDBLite consensus disorder prediction 40 61 - -
Cco02g1832 451 Pfam Helix-loop-helix DNA-binding domain 257 302 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1832 Cco-Chr2:31226410 Cco08g1056 Cco-Chr8:22363287 6.00E-17 dispersed
Cco10g0563 Cco-Chr10:6983232 Cco02g1832 Cco-Chr2:31226410 1.40E-07 dispersed
Cco03g1380 Cco-Chr3:27571036 Cco02g1832 Cco-Chr2:31226410 2.10E-12 transposed
Cco03g1698 Cco-Chr3:31721835 Cco02g1832 Cco-Chr2:31226410 3.40E-43 transposed
Cco06g1413 Cco-Chr6:24602535 Cco02g1832 Cco-Chr2:31226410 1.50E-81 transposed
Cco07g0020 Cco-Chr7:234920 Cco02g1832 Cco-Chr2:31226410 2.50E-16 transposed
Cco07g1749 Cco-Chr7:31592371 Cco02g1832 Cco-Chr2:31226410 2.70E-09 transposed
Cco08g0076 Cco-Chr8:1140016 Cco02g1832 Cco-Chr2:31226410 3.30E-12 transposed
Cco09g0417 Cco-Chr9:3748475 Cco02g1832 Cco-Chr2:31226410 4.60E-12 transposed
Cco09g0721 Cco-Chr9:6541372 Cco02g1832 Cco-Chr2:31226410 8.20E-45 transposed
Cco10g1712 Cco-Chr10:30666634 Cco02g1832 Cco-Chr2:31226410 8.70E-14 transposed
Cco02g1832 Cco-Chr2:31226410 Cco04g2023 Cco-Chr4:34307920 3.30E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58802 PF00010 HLH 1.70E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1832 - - - 0.0