Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1842 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGACCAACTTCTGGGGTTAGTAATACCAAGCCATGGCCAATACATTGTGAATTTTTGCAGAATCAGATGGGGAATCCTGATAAGGAGCCTGCTCTAACTGGAACTAGCGACCGAACTCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATATCTGAGGATGCTGCAGTTATAGACAGGAAAGAGAACCCATCTACTTTTGTTCCAGCTCTTAGATCAGGAGAATGGTCTGACATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTTGGCTGTAGCTTTCTTAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGACGGTCATGGAGGAAAAGGCGCTGCACAGTTTGTTCGTGACCACTTGCCGAGGGTCATTGTTGAAGATTCTGACTTTCCTTTAGAACTTGAAAAGGTCGTCACAAGGTCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTATCTTCTGGCACAACTGCCCTGACTGCAATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGCGATTGCCGAGCAGTACTGTCAAGACAAGGATGTGCAGTAGAAATGTCCAAAGACCACAGGCCATGCTGCACAAAAGAAAGAAAGCGAATCGAGGCCTTGGGCGGATTCATTGATGATGATTACCTAAACGGCCTGCTCGGTGTTACACGTGCGATAGGAGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGTGGACCATTAAGTGCAGAACCTGAACTTAGATTAATGACATTGACAAAGGAAGACGAGTTCTTGATCATAGGTAGTGATGGAATATGGGACGTCTTCATGAGTCAAAACGCTATCGATTTTGCTCGGAGGAGGCTCCAAGAGCACAATGATGTGAAAATTTGCTGCAAGGAAATAGTGGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTGTTGGTTAGCTTTCATTTGGAACCTCCTCCACCTGTAGTTTTTCAAAGGCCAAGATTTAGAAGAAGCATTTCTGCTGAGGGACTTCAGAACCTCAAATTTCTTCTAGAAGGATAG 1146 44.33 MCVTDAEQVGTERPTSGVSNTKPWPIHCEFLQNQMGNPDKEPALTGTSDRTRSGNSFPLESISEDAAVIDRKENPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGCAVEMSKDHRPCCTKERKRIEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELRLMTLTKEDEFLIIGSDGIWDVFMSQNAIDFARRRLQEHNDVKICCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEGLQNLKFLLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31351442 31356376 + CcPI632755_02g018420.1 Cco02g1842 172599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1842 381 CDD PP2Cc 83 348 IPR001932 -
Cco02g1842 381 SMART PP2C_4 73 346 IPR001932 -
Cco02g1842 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169(InterPro)
Cco02g1842 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Cco02g1842 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Cco02g1842 381 FunFam Probable protein phosphatase 2C 22 67 351 - -
Cco02g1842 381 PANTHER PROTEIN PHOSPHATASE 2C 73 348 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco02g1842 381 MobiDBLite consensus disorder prediction 1 23 - -
Cco02g1842 381 MobiDBLite consensus disorder prediction 35 57 - -
Cco02g1842 381 Gene3D - 66 351 IPR036457 -
Cco02g1842 381 SUPERFAMILY PP2C-like 73 349 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1842 Cco-Chr2:31351442 Cco11g1938 Cco-Chr11:32012260 1.50E-88 dispersed
Cco02g1842 Cco-Chr2:31351442 Cco07g0249 Cco-Chr7:2544210 1.90E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58804 PF00481 PP2C 4.30E-66 CL0238 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1842 K14803 - csv:101210349 723.391