Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1852 ATGAGGTGGAATTCTTTCTACACCAAAGCCTCTAAGGCTTTTCATGACCATCCTTCCATCTCCAAGCTTCTCATTGTTTTCACTATCAGTGGAGGTGGACTGGTAGCAGCTACTAATGGCAGATCTCGTTATCATTCTGCATATGCTGATGCAGTCCAACAAGATGGTGACTGCCAGAAGAAGAAAGTGGTGGTGCTTGGAACAGGATGGGCTGGGACCAGTTTTTTGAAGAATCTCAAGAGCTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTCACCCCTTTGCTACCTAGTGTCACCTGTGGGACGGTTGAAGCACGCAGCATTGTCGAACCGATTCGTAGTATTACAAGGAAGAAAGGTCTGAATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAGAAAAAGGTGTTCTGTCGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGATTATGACTATCTGATTATAGCTTTGGGAGCTAAACCCAACACTTTCAACACACCTGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGCGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGCCCAACAGGGGTGGAATTTGCTGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCAGGGCTGTATCCTTCATTGAAAGACTATGTGAAAATAACCCTGTTAGAGGCAGGAGATAATATTTTGAACATGTTTGACAAGAGGATTACCGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAAGTAAAAACTGGTTCCATGGTTGTAAAAGTAACTGATAAGGAAATCTCCACAAAAGAAAGAGCAACCGGTGAATTTGTGTCTGTTCCTTATGGAATGGTTGTCTGGTCTACCGGCATCGGCCCTCGTCCTCAAGTTGTTGATTTCATGAAGCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTATGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAAAGTCATGGAAGATATTGCAGTAATATTCTGCAAGGCAGACAAGGACAAGTCAGGAACTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGATGATATTTGCGAGAGGTACCCTCAAGTAGAGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACACAATCCGACACACAGAAACAGTCGACCGAACTGGATATTGAAAGCTTTAAGTCTTTACTTTCTGAAGTCGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAACCGGATGGAGCAGTGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACGGGACGCCACAGGTTTCACCCTTTCAGGTATAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTTCCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTACTCTGTGTATGCCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATGTCAGATTGGGGTAGAAGATTCATATTTGGCAGGGATTCAAGCAGAATCTGA 1758 43.63 MRWNSFYTKASKAFHDHPSISKLLIVFTISGGGLVAATNGRSRYHSAYADAVQQDGDCQKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSVTCGTVEARSIVEPIRSITRKKGLNIEFREAECYKIDAEKKKVFCRSSQDTNLGGREEFSVDYDYLIIALGAKPNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAGLYPSLKDYVKITLLEAGDNILNMFDKRITAFAEEKFQRDGIEVKTGSMVVKVTDKEISTKERATGEFVSVPYGMVVWSTGIGPRPQVVDFMKQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRKVMEDIAVIFCKADKDKSGTLALQEFQEVVDDICERYPQVEIYLKKKQMKNFAALLKKTQSDTQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFNRMEQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYASKLVSWRTRILVMSDWGRRFIFGRDSSRI 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31421082 31424101 - CcPI632755_02g018520.1 Cco02g1852 172609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1852 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Cco02g1852 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Cco02g1852 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Cco02g1852 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Cco02g1852 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Cco02g1852 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Cco02g1852 585 Gene3D - 51 437 - -
Cco02g1852 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Cco02g1852 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Cco02g1852 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Cco02g1852 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Cco02g1852 585 Pfam NDH2 C-terminal domain 520 581 IPR054585 -
Cco02g1852 585 Gene3D - 461 575 - -
Cco02g1852 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 51 412 - -
Cco02g1852 585 PANTHER NADH DEHYDROGENASE 47 585 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Cco02g1852 585 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 429 584 - -
Cco02g1852 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509(InterPro)
Cco02g1852 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 381 IPR023753 GO:0016491(InterPro)
Cco02g1852 585 SUPERFAMILY EF-hand 341 462 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1852 Cco-Chr2:31421082 Cco03g0556 Cco-Chr3:5696472 6.80E-263 dispersed
Cco04g0269 Cco-Chr4:8001771 Cco02g1852 Cco-Chr2:31421082 5.60E-09 transposed
Cco05g2457 Cco-Chr5:33009601 Cco02g1852 Cco-Chr2:31421082 1.20E-07 transposed
Cco02g0137 Cco-Chr2:1433958 Cco02g1852 Cco-Chr2:31421082 6.30E-229 wgd
Cco02g1852 Cco-Chr2:31421082 Cco04g2048 Cco-Chr4:34492531 7.70E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1852 K03885 - csv:101209855 1122.84