Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1866 ATGGGGAGCTGTTTGTCTACTGGCAATCAGAATAGTTGCAGAAGTGGAAGGAATGGAGAGAGAGTTTCTAGATCCTGTTTGGGAATTGGAGTTTGTGGCCGGATTGAAAGAAAGAGAACATTCTCAGATCATATTTTTTCTCTGCAGCATTTGAATTCTGTTTCTAATAGACTTGTTTATAATGGGAAGACTCGAAATTCTTGTATTTTCACTCAGCAGGGTCGAAAGGGTATAAACCAAGACGCTATGGTTGTGTGGGAAGACTTCATATCAGATGGTGCAATTTTCTGTGGGGTATTTGATGGCCACGGTCCTCATGGTCATGTCGTTGCACGAAAAGTTAGAGATGTTCTGCCAAGAAAGCTAGTGTCATTCTGGCAGTCATCTCAGTTGAAGCATAATAGATCAGATAGAACTTCTTGTCTCCCGTGGAGTCAGAAGGATTCAGCAGATGGTGAAGGACAGAACATAGATGCCTCAGAGGAGGATAAATCAAGTTCTTTATGGAGAAGAGCTTTCCTCAAATCATATAAAGCCATGGATAAGGAGCTCAAGTCTCATCCCAAATTGGACTGTTTCTGTAGTGGCAGTACCGCAGTTACTCTAGTGAAGCAGGGCTCAGATCTATTTGTGGGAAGTATCGGGGATTCTCGAGCGATTCTTGGATCTAAAGACAGCAGTGATTCCCTTGTAGCAACCCAGTTGACAGTAGATCTAAAGCCTGATTTACCCAGAGAAGCTGAAAGGATAAAGAAGTGTAAAGGAAGGGTATTTGCATTGCACGACGAGCCAGAAGTGCCAAGAGTGTGGCTGCCATTTGACAATGCACCTGGATTAGCAATGGCTCGAGCATTTGGCGACTTCTGTTTGAAGGACTATGGAGTTATCTCTATCCCTGAGTTCTCACACCGTGTGCTTACAAATAATGATTTGTTTGTTGTCCTTGCTTCAGATGGGGTTTGGGACGTATTGAGCAATGAAGAGGTGGTCGAGATAGTCTATTCTGCCTCAACTCGGTCATCGGCAGCCCGAATGGTGGTAGACTCAGCTGCTCGAGAGTGGAAACTCAAGTATCCTACTTCGAAAATGGATGACTGTGCTGTCGTCTGCCTATTCTTGGACGGGAAAGTGGATTCAGAATCAGAAAATGAAGAACAAGCTTCTTCTGCAACTCTTCAAACCAACCAAATGGGTCACACCGCAGAATCAGATGATGAGCAGCAGAGGTCTGAGCCAAGTTTGCAAAGGAATTATACGGTCCGATCGTCAGAAGAAAAAGACCAAATTGGAGGATTATCTTCTTCACATAATGAAGAGAATGGAGAACCAATATCTGCTGAAGATGATAATTGGTTGGGACTGGAGGGTGTAACAAGAGTAAACTCTTTGGTTCAACTCCCTAGATTTTCTTGA 1413 43.67 MGSCLSTGNQNSCRSGRNGERVSRSCLGIGVCGRIERKRTFSDHIFSLQHLNSVSNRLVYNGKTRNSCIFTQQGRKGINQDAMVVWEDFISDGAIFCGVFDGHGPHGHVVARKVRDVLPRKLVSFWQSSQLKHNRSDRTSCLPWSQKDSADGEGQNIDASEEDKSSSLWRRAFLKSYKAMDKELKSHPKLDCFCSGSTAVTLVKQGSDLFVGSIGDSRAILGSKDSSDSLVATQLTVDLKPDLPREAERIKKCKGRVFALHDEPEVPRVWLPFDNAPGLAMARAFGDFCLKDYGVISIPEFSHRVLTNNDLFVVLASDGVWDVLSNEEVVEIVYSASTRSSAARMVVDSAAREWKLKYPTSKMDDCAVVCLFLDGKVDSESENEEQASSATLQTNQMGHTAESDDEQQRSEPSLQRNYTVRSSEEKDQIGGLSSSHNEENGEPISAEDDNWLGLEGVTRVNSLVQLPRFS 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31524948 31526856 - CcPI632755_02g018660.1 Cco02g1866 172623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1866 470 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g1866 470 Pfam Protein phosphatase 2C 157 350 IPR001932 -
Cco02g1866 470 PANTHER PROTEIN PHOSPHATASE 67 372 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco02g1866 470 MobiDBLite consensus disorder prediction 380 452 - -
Cco02g1866 470 CDD PP2Cc 72 373 IPR001932 -
Cco02g1866 470 MobiDBLite consensus disorder prediction 412 440 - -
Cco02g1866 470 MobiDBLite consensus disorder prediction 137 163 - -
Cco02g1866 470 MobiDBLite consensus disorder prediction 137 153 - -
Cco02g1866 470 MobiDBLite consensus disorder prediction 1 19 - -
Cco02g1866 470 SUPERFAMILY PP2C-like 61 375 IPR036457 -
Cco02g1866 470 MobiDBLite consensus disorder prediction 384 401 - -
Cco02g1866 470 ProSiteProfiles PPM-type phosphatase domain profile. 66 373 IPR001932 -
Cco02g1866 470 FunFam probable protein phosphatase 2C 52 57 376 - -
Cco02g1866 470 Gene3D - 53 375 IPR036457 -
Cco02g1866 470 SMART PP2C_4 55 371 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1866 Cco-Chr2:31524948 Cco10g0361 Cco-Chr10:4223389 6.10E-113 dispersed
Cco08g0583 Cco-Chr8:15105839 Cco02g1866 Cco-Chr2:31524948 7.20E-109 transposed
Cco02g0124 Cco-Chr2:1344607 Cco02g1866 Cco-Chr2:31524948 4.60E-177 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1866 - - - 0.0