Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1877 ATGCAGCTCCTCCTCCGCCGCCGCAGTTTTCGGCTCATTAGAGCTTTGTTCTGTGCCGCGGCTGTGCTTGAGTGGTTCACGGCGGCGGCTCAGCTCCAACACCGTGTACCGAATCTACATTGGCTTCCAGCCACCGCCACGTGGTACGGGAGTCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGACGTGAAGCCTCTAAAGGCCAGAGTTGGGGCTGTGAGTCCAGTTTTGTTCAGAAATGGTGAAGGGTGTGGAGCCTGTTACAAAGTGAAGTGTTTAGACCAGAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGATGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCTTTTGGCCGTATGGCCATCGCCGGCGAAGGTGGGCAGCTCAGAAACCGAGGCGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCAAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTAGTTGAATTCGAGGATGGAGATGGAGACATCGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGGGCAAATTGGTGCATAATTGGCGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACTTTATCTACAGGAAGAACCCTCTCAGCAAGGGATATAATCCCAAGGAATTGGTCTCCCAAAGCCACGTACACTTCCCGCCTTAATTTCTTCTCTTGA 810 51.36 MQLLLRRRSFRLIRALFCAAAVLEWFTAAAQLQHRVPNLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDQNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYQGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLNFFS 269
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31664560 31666047 - CcPI632755_02g018770.1 Cco02g1877 172634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1877 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Cco02g1877 269 SUPERFAMILY Barwin-like endoglucanases 40 168 IPR036908 -
Cco02g1877 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Cco02g1877 269 Gene3D - 166 268 IPR036749 -
Cco02g1877 269 PANTHER EXPANSIN-B3 25 267 - GO:0006949(PANTHER)|GO:0009506(PANTHER)
Cco02g1877 269 FunFam Beta-expansin 3 166 268 - -
Cco02g1877 269 CDD DPBB_EXPB_N 41 164 - -
Cco02g1877 269 SMART dpbb_1 77 159 IPR007112 -
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Cco02g1877 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Cco02g1877 269 Gene3D - 27 165 IPR036908 -
Cco02g1877 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Cco02g1877 269 Pfam Lytic transglycolase 79 157 IPR009009 -
Cco02g1877 269 FunFam Expansin B3 27 165 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1877 Cco-Chr2:31664560 Cco05g0035 Cco-Chr5:381582 2.20E-62 dispersed
Cco02g1877 Cco-Chr2:31664560 Cco07g0300 Cco-Chr7:3021118 6.00E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1877 K20628 - csv:101202998 509.605