Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1890 ATGGGCTGCATCTGTTCTAAGGTTTTAGCTGATGAGTGTAGTGACAATGAACATGATACCTCCAAAAGAGCTCATTCCCCAATTAAACACCTCTCTGAATTAAAAACATCAAGATCTGGCTCTCCCACATCTGAGAAGATTTGGGAGAAAGATAGGCTGAATTGTAGTGATGTTACGGTTATGTTGTTTGATACAACGGCGAATGGTTCTCTACGCTCACACGGCAAGCTTTCTAATGAGAAGAAGAGCACAGACATCCCTGATGTCACCATTATCAACCATCCATTTATGGGAAAGATTCCGAAGGCTACCAAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAATAACTTCATCAAGTTAGAGAAAATTGGCCAAGGAACTTATAGCAGTGTGTATAAAGCTCGGGATATCATTCAAGATAAAGTTGTGGCCTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCCAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCATGTACTATGTACCTTGTTTTTGAATATATGGAACATGATCTTACCGGGCTTGCATCACGGCCTGGCGCGTCGTTCACCGAACCACAGATGAAGTGTTACATGAAGCAACTTTTGAGTGGACTTGATCATTGTCACAGTAATGGGGTTCTTCATAGAGACATAAAGGGCTCAAATCTTCTTATTGACAACAATGGCATTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGATTCACATTCAACAGTTCCAATGACGAGCCGTGTAATAACTCTCTGGTATCGACCACCGGAACTTTTACTTGGAGTGTCTAAATATGGAGTTGAAGTTGATTTATGGAGTGCTGGCTGCATTCTAGGAGAGTTATATACTGGCAAGCCCATCTTACCAGGGAAAACAGAGGTTGAACAACTACATAAAATATTTAAGCTATGTGGTTCCCCTTCCAAGGACTATTGGAAAAAATTGCATTTGAAGCAATCAACAAGCATGAAACCTCCACAGTCATATGAAAGATGTCTTCGAGAAAGATATAACGATATTCCTCGTGCTGCTGTTGACCTTATGGACACTTTGTTATCTATAGATCCTACAGGGCGAGGAACTGCTGCTTCCGCACTCAACAGTGAGTTCTTTACAACAAGGCCCTTACCAAGCGATCCTTCAAATTTGCCAAAATACCCTCCAAGCAAAGAGATCGATTCAAAACTGCGTGAAGAGGAAGCAAGAAGGCAACAAGGAGTAGGTGGTGGGAGAAGCCAAATAGTCTACCAAGAAGCAAAAGGACTGAAGCAATCTAGAGTAGTTCCTGCTGCAAAGGCTAATGCTGAGTTGGTTATTTCATTACTGAGAAAACGAAGCCGTTCAAGCGCGAAGTACCGGAATGAAACGTATTCTTATGGTTTGGTGTCGAAAAAAACCTCAAATTCAGGACCTATAACTCAGGGACCGAGATTTAGAAACAACAAAAAGGAACCAAAACATGTTTCTATGGTTTCCAGTGAGTGTTCAATATCATCTGGTCCTATTGAATTTGTTTCTTACAAATATGTCAGAGAAAGAAATGAAGTTTCAAAGCCAGAATCAATGAGCCAAGACAAAAATCTTCCTCTTCTATCCAGTTCTGCTGAAGAGTCATCCATCAAAAAGCTAAGCGAAGACAAAGTTGATATGAAGAAAGTTACAAATTCTTGTCAGTTGGAAGATTCAAAGGCCTCAGCTCTAATAGTTGGCTAA 1860 41.29 MGCICSKVLADECSDNEHDTSKRAHSPIKHLSELKTSRSGSPTSEKIWEKDRLNCSDVTVMLFDTTANGSLRSHGKLSNEKKSTDIPDVTIINHPFMGKIPKATKAEQVAAGWPSWLAVVAGEAIKGWLPKRANNFIKLEKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLASRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSHSTVPMTSRVITLWYRPPELLLGVSKYGVEVDLWSAGCILGELYTGKPILPGKTEVEQLHKIFKLCGSPSKDYWKKLHLKQSTSMKPPQSYERCLRERYNDIPRAAVDLMDTLLSIDPTGRGTAASALNSEFFTTRPLPSDPSNLPKYPPSKEIDSKLREEEARRQQGVGGGRSQIVYQEAKGLKQSRVVPAAKANAELVISLLRKRSRSSAKYRNETYSYGLVSKKTSNSGPITQGPRFRNNKKEPKHVSMVSSECSISSGPIEFVSYKYVRERNEVSKPESMSQDKNLPLLSSSAEESSIKKLSEDKVDMKKVTNSCQLEDSKASALIVG 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31782537 31785029 + CcPI632755_02g018900.1 Cco02g1890 172647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1890 619 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Cco02g1890 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1890 619 PANTHER CELL DIVISION PROTEIN KINASE 136 420 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco02g1890 619 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1890 619 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524(InterPro)
Cco02g1890 619 MobiDBLite consensus disorder prediction 516 535 - -
Cco02g1890 619 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Cco02g1890 619 FunFam probable serine/threonine-protein kinase At1g54610 219 460 - -
Cco02g1890 619 MobiDBLite consensus disorder prediction 439 454 - -
Cco02g1890 619 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Cco02g1890 619 SMART serkin_6 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1890 619 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Cco02g1890 619 MobiDBLite consensus disorder prediction 570 585 - -
Cco02g1890 619 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1890 619 MobiDBLite consensus disorder prediction 420 458 - -
Cco02g1890 619 CDD STKc_CDK9_like 136 420 - -
Cco02g1890 619 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1890 Cco-Chr2:31782537 Cco05g1100 Cco-Chr5:9812202 4.10E-173 dispersed
Cco02g1890 Cco-Chr2:31782537 Cco02g1891 Cco-Chr2:31790860 3.10E-165 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86584 PF00069 Pkinase 1.70E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1890 - - - 0.0