Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1891 | ATGTTCTTTCTTGATTCTGGAAGATTGGACTTTAGAAATTCGTTCCAGTGTTTTTTCTCAACGTCTGCGCTTTGTGGTTCAAAATCCCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGGTTTGGTTTCTGGGCTGCAAAAATGGGTTGTCAGTGTTCCAAGCCTTCTATTGATGAAGATGGCAAAAACAGAGCCTCTGAGAAATTTCCTTCACGAAAGGGTTCACGAGATAATTTATTAAAAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCCTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACGGATGGTGTTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAGGCTATGGAAGCGGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCACTCGAGGGATGGCTGCCACGGAGAGCCGAAACTTTCGAGAAACTTGACAAGATAGGACAAGGCACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCAAAATAAACTAGTCGCTCTAAAGCGAGTTCGATTCGATAATCTCGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACAGGCCTTGCATCTCGGCCTGGGGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTTCCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGCATCTTGAAGATTGCAGATTTTGGATTAGCAAGCCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGCCGTGTAGTGACTCTATGGTACCGACCACCTGAACTTCTGCTTGGAGCTTCTTATTATGGGGTTGCAGTGGACCTGTGGAGTACGGGTTGCATACTAGCGGAGCTATATTCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCACAAGATATTTAAACTTTGTGGGTCACCGCCTGAGAACTATTGGAAGAAATTGCAATTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCACCATCTGCGGTGGCTCTTGTGGATAAGTTGCTTTCTATAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGCGAGTTTTTTACGACTAAACCTCTTGCTTGCGAGCCTACGAGTCTGCCCAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTCCCTGGCTGCAGAAGGCAGTCAAGAGCTGAGGGCAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACATTAATCTTTCTCTGAATGCTAAGGATGAAGTAAACATGTCAATGCAGAAAAGGCAAGGTTATTCAAGTTTTAAGGGCCGGGGCGGAGTGTTGAATCCTCATGGGGATGAGACAGTTTCTGGTTTTTTGATTCCTCCGCCCAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCGCATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAGATCTAGGAAGCAACTCGATGACCATTCGATGGCGCTCGATGGATCCAATCTCTCAGTATTATCCCATTTGGTAGCAACGAGGTCTAATATATCTGATCATCCCTTTGATAGACCGGGTCCATCACAATCAGAAGTAGGCAGATTGCCTGACTTCGTCAGGAATTCAGAGTCAACGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCGGATTCATATCGAATAGAGAACGAAAAAGTTTGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAACAAGCTTTATACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATAAAATTCTGAAAGAGCGAGACCGTCAGATTCAAGAATACGCTCGACAAGCACGACACGATAAAGCTGCTAACAGTCAGTTAAAGAGTTCAAGAGCAACAACTGGAAAACATCTGATGTTAAGCCATGGAATCGACGTGTTCCACGAACAACCAGACCTCCAAATCGAACGGAGAAAAATCAAGCTACTCGTCGGGAATCGGAGCTTCGACGGAAGTTTTCAAATGTCCGACATATCGGCTAGTTTCATCGACATATTTCCAGAAGAATCCGACAACCCACCGGAGAGTTCATATGATTCTAGCGAAGAAGGAGATCAGAATGGAGAAACTTCTTCAATCGTTAAAGAAAACAGAGCTTTCTGGAAATCGCAAAAAGAAGTTCTTCAGGCGACTTTGAGAAGAACGAATTCGATTGAGTTAGAAATCCGGCAAGCAACGAAAAATGCACTCAGAGAAATGGATTTCAAGTCCATTCAATGTGGTTGCCGGAGAGCGGCGGAAGTTGCGGTGTGTCGGGAGTGCGTACAGATAGAAGTATGCAATCATTTGAGAAACGCCGGTTACAATTGCGCCGTTTGTAAGTCTAAATGGAAAAGCTCACCGGAAATTCCATCAGGGGAGCACAGTTATTTGGAAGTGATCGACGATTGTGATCCGAATGATAGAGTGATAGTCGAGCTGAATTTTAGAGCGGAATTCGAAATAGCTAGAGCGAGTGAAGAGTACAAGCGATTGGTGAGACGGTTGCCGGAAGAATTCATCGGAAAAGACGAGAAGCTTCGAGAATTGATAAGAATTCTGTGCAATGCGGCGGAGAAGTGCATGAAGGAAAAGAAAATGCACTTGGGGCCATGGAGGAAGTACAGATACATGCAGGCCAAGTGGTTAGGGAAGTGCGAGAGGTCGCCGCCGGCGCCGGTGCCGCTGCCAGTGGGATTATCCGGGCGGCCGCCGAAGGCAAGGGCCTCGATGCTTACTTATGATCTGCTGCAGAGCTTGCCAGCGGCCATGGTTAGCTCTGCTTCTGCGGTTGAAGTGGTGTGA | 3222 | 45.25 | MFFLDSGRLDFRNSFQCFFSTSALCGSKSRVLKVFSELVGYIGRFGFWAAKMGCQCSKPSIDEDGKNRASEKFPSRKGSRDNLLKKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGVDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRRAETFEKLDKIGQGTYSSVYKARDIIQNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYFHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASYYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPPSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRRQSRAEGKDPKDYVEGRRPKEAHINLSLNAKDEVNMSMQKRQGYSSFKGRGGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMRSRKQLDDHSMALDGSNLSVLSHLVATRSNISDHPFDRPGPSQSEVGRLPDFVRNSESTRKQDRIFYTHRVADSYRIENEKVCAKEQSLLAYGTDMNKLYTSGPILGPSNNLDKILKERDRQIQEYARQARHDKAANSQLKSSRATTGKHLMLSHGIDVFHEQPDLQIERRKIKLLVGNRSFDGSFQMSDISASFIDIFPEESDNPPESSYDSSEEGDQNGETSSIVKENRAFWKSQKEVLQATLRRTNSIELEIRQATKNALREMDFKSIQCGCRRAAEVAVCRECVQIEVCNHLRNAGYNCAVCKSKWKSSPEIPSGEHSYLEVIDDCDPNDRVIVELNFRAEFEIARASEEYKRLVRRLPEEFIGKDEKLRELIRILCNAAEKCMKEKKMHLGPWRKYRYMQAKWLGKCERSPPAPVPLPVGLSGRPPKARASMLTYDLLQSLPAAMVSSASAVEVV | 1073 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 31790860 | 31798074 | + | CcPI632755_02g018910.1 | Cco02g1891 | 172648 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1891 | 1073 | ProSitePatterns | Protein kinases ATP-binding region signature. | 207 | 230 | IPR017441 | GO:0005524(InterPro) | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 61 | 84 | - | - | |
Cco02g1891 | 1073 | Pfam | Protein kinase domain | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1891 | 1073 | CDD | STKc_CDK9_like | 201 | 485 | - | - | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 819 | 839 | - | - | |
Cco02g1891 | 1073 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 321 | 333 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g1891 | 1073 | Gene3D | Phosphorylase Kinase; domain 1 | 188 | 283 | - | - | |
Cco02g1891 | 1073 | SUPERFAMILY | Protein kinase-like (PK-like) | 196 | 490 | IPR011009 | - | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 815 | 839 | - | - | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 508 | 529 | - | - | |
Cco02g1891 | 1073 | PANTHER | CELL DIVISION PROTEIN KINASE | 200 | 485 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco02g1891 | 1073 | FunFam | probable serine/threonine-protein kinase At1g54610 | 284 | 523 | - | - | |
Cco02g1891 | 1073 | Gene3D | Transferase(Phosphotransferase) domain 1 | 284 | 522 | - | - | |
Cco02g1891 | 1073 | FunFam | probable serine/threonine-protein kinase At1g54610 | 188 | 283 | - | - | |
Cco02g1891 | 1073 | MobiDBLite | consensus disorder prediction | 503 | 529 | - | - | |
Cco02g1891 | 1073 | SMART | serkin_6 | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1891 | 1073 | NCBIfam | uncharacterized plant-specific domain TIGR01615 | 904 | 1028 | IPR006502 | - | |
Cco02g1891 | 1073 | ProSiteProfiles | Protein kinase domain profile. | 201 | 485 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g1891 | 1073 | Pfam | PDDEXK-like family of unknown function | 809 | 1027 | IPR006502 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1891 | Cco-Chr2:31790860 | Cco05g0679 | Cco-Chr5:5590154 | 8.10E-161 | dispersed | |
Cco07g0062 | Cco-Chr7:594414 | Cco02g1891 | Cco-Chr2:31790860 | 7.90E-23 | dispersed | |
Cco09g0839 | Cco-Chr9:7892865 | Cco02g1891 | Cco-Chr2:31790860 | 2.40E-24 | dispersed | |
Cco09g2174 | Cco-Chr9:36117322 | Cco02g1891 | Cco-Chr2:31790860 | 1.20E-24 | dispersed | |
Cco02g1890 | Cco-Chr2:31782537 | Cco02g1891 | Cco-Chr2:31790860 | 3.10E-165 | tandem | |
Cco02g2568 | Cco-Chr2:37980105 | Cco02g1891 | Cco-Chr2:31790860 | 7.60E-94 | transposed | |
Cco05g1100 | Cco-Chr5:9812202 | Cco02g1891 | Cco-Chr2:31790860 | 2.20E-207 | transposed | |
Cco02g1891 | Cco-Chr2:31790860 | Cco07g0278 | Cco-Chr7:2859703 | 9.20E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86585 | PF00069 | Pkinase | 1.60E-66 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1891 | - | - | - | 0.0 |