Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1891 ATGTTCTTTCTTGATTCTGGAAGATTGGACTTTAGAAATTCGTTCCAGTGTTTTTTCTCAACGTCTGCGCTTTGTGGTTCAAAATCCCGTGTTTTGAAAGTCTTCTCTGAATTGGTTGGGTATATAGGAAGGTTTGGTTTCTGGGCTGCAAAAATGGGTTGTCAGTGTTCCAAGCCTTCTATTGATGAAGATGGCAAAAACAGAGCCTCTGAGAAATTTCCTTCACGAAAGGGTTCACGAGATAATTTATTAAAAAAAGGAGAGGATATGCGATTGAATTCTGTGAAAAGAGACGAAGATGTTCGAATAAATTCCTCACAGAGAGCAGATAGTATTCGATCAAAGGTGAAAACGGATGGTGTTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGGGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGAGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGAAAAGGAAGCATTCCAAAGGCTATGGAAGCGGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCTCTGTGGCCGGTGAAGCACTCGAGGGATGGCTGCCACGGAGAGCCGAAACTTTCGAGAAACTTGACAAGATAGGACAAGGCACATATAGTAGTGTTTACAAGGCTCGTGATATCATTCAAAATAAACTAGTCGCTCTAAAGCGAGTTCGATTCGATAATCTCGATGTGGAGAGTGTCAAGTTTATGGCCCGGGAAATCCTTATCCTGCGTAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCGCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAGCATGACCTTACAGGCCTTGCATCTCGGCCTGGGGTCAAGTTCAGCGAACCACAGGTTAAATGCTATATGCAACAACTTCTAAGGGGGCTTGATTATTTCCACAGTCGTGGTGTCCTCCACCGCGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGCATCTTGAAGATTGCAGATTTTGGATTAGCAAGCCCTTTTGACCCCCATAATCAAGTTCCCTTAACAAGCCGTGTAGTGACTCTATGGTACCGACCACCTGAACTTCTGCTTGGAGCTTCTTATTATGGGGTTGCAGTGGACCTGTGGAGTACGGGTTGCATACTAGCGGAGCTATATTCTGGGAAGCCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCACAAGATATTTAAACTTTGTGGGTCACCGCCTGAGAACTATTGGAAGAAATTGCAATTACCTCATTCAACTGGATTTAAGACGGCTCAGCCATACCGACGTTGTATCGGGGAAATGCTCAAGGATTTCCCACCATCTGCGGTGGCTCTTGTGGATAAGTTGCTTTCTATAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGCGAGTTTTTTACGACTAAACCTCTTGCTTGCGAGCCTACGAGTCTGCCCAAATATCCTCCCAGCAAAGAGATTGATGCAAAATTCCCTGGCTGCAGAAGGCAGTCAAGAGCTGAGGGCAAAGACCCTAAAGATTATGTGGAAGGGAGGCGACCTAAAGAAGCTCACATTAATCTTTCTCTGAATGCTAAGGATGAAGTAAACATGTCAATGCAGAAAAGGCAAGGTTATTCAAGTTTTAAGGGCCGGGGCGGAGTGTTGAATCCTCATGGGGATGAGACAGTTTCTGGTTTTTTGATTCCTCCGCCCAAACAAAATCAATCTGTCACAGAAATTTGCTCAGATACAGGCCGGATTTCGCATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAGATCTAGGAAGCAACTCGATGACCATTCGATGGCGCTCGATGGATCCAATCTCTCAGTATTATCCCATTTGGTAGCAACGAGGTCTAATATATCTGATCATCCCTTTGATAGACCGGGTCCATCACAATCAGAAGTAGGCAGATTGCCTGACTTCGTCAGGAATTCAGAGTCAACGAGAAAGCAGGACCGAATATTTTATACACACCGAGTTGCGGATTCATATCGAATAGAGAACGAAAAAGTTTGTGCTAAAGAACAGTCCCTGCTTGCTTATGGGACAGACATGAACAAGCTTTATACTTCTGGTCCAATCCTTGGTCCATCAAACAACTTAGATAAAATTCTGAAAGAGCGAGACCGTCAGATTCAAGAATACGCTCGACAAGCACGACACGATAAAGCTGCTAACAGTCAGTTAAAGAGTTCAAGAGCAACAACTGGAAAACATCTGATGTTAAGCCATGGAATCGACGTGTTCCACGAACAACCAGACCTCCAAATCGAACGGAGAAAAATCAAGCTACTCGTCGGGAATCGGAGCTTCGACGGAAGTTTTCAAATGTCCGACATATCGGCTAGTTTCATCGACATATTTCCAGAAGAATCCGACAACCCACCGGAGAGTTCATATGATTCTAGCGAAGAAGGAGATCAGAATGGAGAAACTTCTTCAATCGTTAAAGAAAACAGAGCTTTCTGGAAATCGCAAAAAGAAGTTCTTCAGGCGACTTTGAGAAGAACGAATTCGATTGAGTTAGAAATCCGGCAAGCAACGAAAAATGCACTCAGAGAAATGGATTTCAAGTCCATTCAATGTGGTTGCCGGAGAGCGGCGGAAGTTGCGGTGTGTCGGGAGTGCGTACAGATAGAAGTATGCAATCATTTGAGAAACGCCGGTTACAATTGCGCCGTTTGTAAGTCTAAATGGAAAAGCTCACCGGAAATTCCATCAGGGGAGCACAGTTATTTGGAAGTGATCGACGATTGTGATCCGAATGATAGAGTGATAGTCGAGCTGAATTTTAGAGCGGAATTCGAAATAGCTAGAGCGAGTGAAGAGTACAAGCGATTGGTGAGACGGTTGCCGGAAGAATTCATCGGAAAAGACGAGAAGCTTCGAGAATTGATAAGAATTCTGTGCAATGCGGCGGAGAAGTGCATGAAGGAAAAGAAAATGCACTTGGGGCCATGGAGGAAGTACAGATACATGCAGGCCAAGTGGTTAGGGAAGTGCGAGAGGTCGCCGCCGGCGCCGGTGCCGCTGCCAGTGGGATTATCCGGGCGGCCGCCGAAGGCAAGGGCCTCGATGCTTACTTATGATCTGCTGCAGAGCTTGCCAGCGGCCATGGTTAGCTCTGCTTCTGCGGTTGAAGTGGTGTGA 3222 45.25 MFFLDSGRLDFRNSFQCFFSTSALCGSKSRVLKVFSELVGYIGRFGFWAAKMGCQCSKPSIDEDGKNRASEKFPSRKGSRDNLLKKGEDMRLNSVKRDEDVRINSSQRADSIRSKVKTDGVDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSSVAGEALEGWLPRRAETFEKLDKIGQGTYSSVYKARDIIQNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYFHSRGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASYYGVAVDLWSTGCILAELYSGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCIGEMLKDFPPSAVALVDKLLSIDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFPGCRRQSRAEGKDPKDYVEGRRPKEAHINLSLNAKDEVNMSMQKRQGYSSFKGRGGVLNPHGDETVSGFLIPPPKQNQSVTEICSDTGRISHSGPLISKPDWMRSRKQLDDHSMALDGSNLSVLSHLVATRSNISDHPFDRPGPSQSEVGRLPDFVRNSESTRKQDRIFYTHRVADSYRIENEKVCAKEQSLLAYGTDMNKLYTSGPILGPSNNLDKILKERDRQIQEYARQARHDKAANSQLKSSRATTGKHLMLSHGIDVFHEQPDLQIERRKIKLLVGNRSFDGSFQMSDISASFIDIFPEESDNPPESSYDSSEEGDQNGETSSIVKENRAFWKSQKEVLQATLRRTNSIELEIRQATKNALREMDFKSIQCGCRRAAEVAVCRECVQIEVCNHLRNAGYNCAVCKSKWKSSPEIPSGEHSYLEVIDDCDPNDRVIVELNFRAEFEIARASEEYKRLVRRLPEEFIGKDEKLRELIRILCNAAEKCMKEKKMHLGPWRKYRYMQAKWLGKCERSPPAPVPLPVGLSGRPPKARASMLTYDLLQSLPAAMVSSASAVEVV 1073
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31790860 31798074 + CcPI632755_02g018910.1 Cco02g1891 172648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1891 1073 ProSitePatterns Protein kinases ATP-binding region signature. 207 230 IPR017441 GO:0005524(InterPro)
Cco02g1891 1073 MobiDBLite consensus disorder prediction 60 84 - -
Cco02g1891 1073 MobiDBLite consensus disorder prediction 61 84 - -
Cco02g1891 1073 Pfam Protein kinase domain 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1891 1073 CDD STKc_CDK9_like 201 485 - -
Cco02g1891 1073 MobiDBLite consensus disorder prediction 819 839 - -
Cco02g1891 1073 ProSitePatterns Serine/Threonine protein kinases active-site signature. 321 333 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1891 1073 Gene3D Phosphorylase Kinase; domain 1 188 283 - -
Cco02g1891 1073 SUPERFAMILY Protein kinase-like (PK-like) 196 490 IPR011009 -
Cco02g1891 1073 MobiDBLite consensus disorder prediction 815 839 - -
Cco02g1891 1073 MobiDBLite consensus disorder prediction 508 529 - -
Cco02g1891 1073 PANTHER CELL DIVISION PROTEIN KINASE 200 485 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cco02g1891 1073 FunFam probable serine/threonine-protein kinase At1g54610 284 523 - -
Cco02g1891 1073 Gene3D Transferase(Phosphotransferase) domain 1 284 522 - -
Cco02g1891 1073 FunFam probable serine/threonine-protein kinase At1g54610 188 283 - -
Cco02g1891 1073 MobiDBLite consensus disorder prediction 503 529 - -
Cco02g1891 1073 SMART serkin_6 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1891 1073 NCBIfam uncharacterized plant-specific domain TIGR01615 904 1028 IPR006502 -
Cco02g1891 1073 ProSiteProfiles Protein kinase domain profile. 201 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1891 1073 Pfam PDDEXK-like family of unknown function 809 1027 IPR006502 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1891 Cco-Chr2:31790860 Cco05g0679 Cco-Chr5:5590154 8.10E-161 dispersed
Cco07g0062 Cco-Chr7:594414 Cco02g1891 Cco-Chr2:31790860 7.90E-23 dispersed
Cco09g0839 Cco-Chr9:7892865 Cco02g1891 Cco-Chr2:31790860 2.40E-24 dispersed
Cco09g2174 Cco-Chr9:36117322 Cco02g1891 Cco-Chr2:31790860 1.20E-24 dispersed
Cco02g1890 Cco-Chr2:31782537 Cco02g1891 Cco-Chr2:31790860 3.10E-165 tandem
Cco02g2568 Cco-Chr2:37980105 Cco02g1891 Cco-Chr2:31790860 7.60E-94 transposed
Cco05g1100 Cco-Chr5:9812202 Cco02g1891 Cco-Chr2:31790860 2.20E-207 transposed
Cco02g1891 Cco-Chr2:31790860 Cco07g0278 Cco-Chr7:2859703 9.20E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86585 PF00069 Pkinase 1.60E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1891 - - - 0.0