Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1907 ATGCTCCGATCCGCTCCTGGAATGGAGGATCAGCGAGATGATGTTGCACCATCAGAGCAGGGGCCTTCCAATGCTTCCTGGTGGTCTTCTGATTTTGAGGAGAAATTTGGATCTGTTTCTTTGGGCCCTCGGGAAGATATTGTAAGTGAAAAGGAAGAGATCATCAATTCTGACCAAGATGTGTTATTGTCGCCTCAGAGAGCTTCTCAAATTCTCTGGGGTACTGGAATGCTTTGTGAACCAATTCCAGATGGGTTCTATTCTGTTATTCCGGATAAAAGGCTGAAAGAGCGGTTTCACAGTATTCCTTCGCTGGATGAGCTTCGTGCTTTGGAGGCCGAAGGTTACAGAAATGATGTTATTCTTGTGGAGACAGAGAAAGATAAAAAGCTTTCTATGCTGAAGCAACTGATCTTGACACTGGTTAAAGGATTGAGTTCAAATCCAGCTGCAATTATCAAGAAGATTGCTGGACTGGTTTCTGATTTTTATAAACGACCAATTTTAGAAAGTCCAGCAAAAGCTGCTCTAGAAGAAAACTCCCACTTGTTCGAGGATAGAGGCATTCAATTACTTGGACAAATAAAATTTGGTTCTTGCCGTCCAAGAGCTATCTTATTTAAGGCTCTGGCTGACACTGTAGGGCTTGAAAGCCGTCTCATGGTGGGCTTGCCTAATGAGGGGGCTATTGGGTGCGTGGACTCATACAAGCATATGTCTGTGACAGTTGTGTTGAATTCTGTGGAACTAGTTGTTGATCTGATGCGATTCCCTGGCCAGTTGTTACCTCGGTCAACTAAGGCAATTTTTATGACCCATATTTCCGCTGCTGGTGAAAGTGATTCTGCAGAAAACGATTCCTGTGATTCACCACTAGAACCTAATAGTCCTCTTTATGGGTTCTCAGAAAGAGTTGATCCTGACAGTGCTGAGAAAGATGAGAGCCTTCAATTCCACAGAAAATTTGAAGCAGCTTCAAATGCATATGGTCATTCATTGCGCAACATGATGTTGCGATCAAGTACAACACTTGACAGGAAACTGAGTTTATCACATAGTGAACCTAACATTGCAAATGCATTTTGGCGACGTAGTCGGAGAAAGGATATTGCTGAACAGCGGACTGCTAGTTCAAGTCCAGAGCATCCTTCATTTCGGGCGCGTGGCCGGTCTATGCTTAGTGGGGATAGGAAAGCCTTCAGAGATTTTTCTGATGATGTCTCTACTTCAAGATCAGATGGCGCTTCAACTTCAACTTCAGAAGCACGTCGATTAAGAAGAAGGAGCATCAGCATTACTCCAGAGATTGGTGATGATATCGTGAGGGCTGTACGAGCAATGAGTGAAACATTGAAGCAAAATCGTCTTTTGAGAGGGCAAGAAGATGACAGGTCGTTCTCCCACCCTTCAAATGAAAGAAATAGTAGTTCAGATGTTCAGAGAAATGATCAAGTGGGCTCTCAAAGAGCAATATCATTGCCATCATCGCCACATGTGTATAGGGGTCAAACCTCTGATAGAATTGGGCATTCAGCATATCCGAATCATGAATTAGCCTCAAAATGGACTAAAGTTCTTGAATCTTTCTCCTTGAATGACAAACCACTATTACCTTACCCAGAGTGGAACATCGATTACTCAGAACTGACAGTTGGAATCCGTATTGGAATTGGGTTTTTTGGAGAAGTTTTTCGTGGCATTTGGAATGGAACAGACGTAGCAATCAAAGTTTTCCTAGAGCAAGATCTAACTCCTGAAAACATTGAAGACTTCTGTAACGAGATATCAATTCTTAGTCGTCTTCGACATCCTAATGTTATACTATTTCTGGGGGCATGCACAAAGCCGCCACGCTTATCAATGATCACCGAATACATGGAGATGGGTTCCTTGTATTCCTTGATCCATTTGAGTGGTCAGAAGAAAAAACTTAGCTGGCGGAGGAGACTGAAGATGTTGCGTGACATATGCAGGGGTTTGATGTGCATACACCGAATGAAAATAGCTCATCGGGACCTAAAAAGTGCAAATTGCCTAGTGAACAAGCACTGGACCGTCAAGATATGTGATTTTGGACTTTCAAGAATATTGACAGATGCTCCAGCAAGAGGGTCTCCATCTGCAGGAACTCCAGAATGGATGGCTCCTGAGCTATTTCGAAATGAGCCCTTCACTGAAAAGTGTGATATTTTCAGCCTGGGGGTCATTATGTGGGAGCTATGCACGCTAAATAGACCATGGGAGGGTGTTCCACCGGAGCGGGTAGTTTATGCTGTTGGCACTGAGGGATCCCGCCTTGAGATTCCCGAAGGCCCGCTTGGCAGACTTATATCAGATTGTTGGGCGGAACCAAATGAACGGCCAAGCTGCGAAGAGATTCTCTCACGCTTGCTGGACTGCGATCAAGCAAGATCGTTGGAAGGGGTCAGTAAATCTGATCTATCACAGCTTGCTTATTTGATGCTTGTTACGACCTTTCTTGGAAATCCCTTGTAA 2496 43.99 MLRSAPGMEDQRDDVAPSEQGPSNASWWSSDFEEKFGSVSLGPREDIVSEKEEIINSDQDVLLSPQRASQILWGTGMLCEPIPDGFYSVIPDKRLKERFHSIPSLDELRALEAEGYRNDVILVETEKDKKLSMLKQLILTLVKGLSSNPAAIIKKIAGLVSDFYKRPILESPAKAALEENSHLFEDRGIQLLGQIKFGSCRPRAILFKALADTVGLESRLMVGLPNEGAIGCVDSYKHMSVTVVLNSVELVVDLMRFPGQLLPRSTKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGFSERVDPDSAEKDESLQFHRKFEAASNAYGHSLRNMMLRSSTTLDRKLSLSHSEPNIANAFWRRSRRKDIAEQRTASSSPEHPSFRARGRSMLSGDRKAFRDFSDDVSTSRSDGASTSTSEARRLRRRSISITPEIGDDIVRAVRAMSETLKQNRLLRGQEDDRSFSHPSNERNSSSDVQRNDQVGSQRAISLPSSPHVYRGQTSDRIGHSAYPNHELASKWTKVLESFSLNDKPLLPYPEWNIDYSELTVGIRIGIGFFGEVFRGIWNGTDVAIKVFLEQDLTPENIEDFCNEISILSRLRHPNVILFLGACTKPPRLSMITEYMEMGSLYSLIHLSGQKKKLSWRRRLKMLRDICRGLMCIHRMKIAHRDLKSANCLVNKHWTVKICDFGLSRILTDAPARGSPSAGTPEWMAPELFRNEPFTEKCDIFSLGVIMWELCTLNRPWEGVPPERVVYAVGTEGSRLEIPEGPLGRLISDCWAEPNERPSCEEILSRLLDCDQARSLEGVSKSDLSQLAYLMLVTTFLGNPL 831
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 31947509 31957764 - CcPI632755_02g019070.1 Cco02g1907 172664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1907 831 PANTHER SERINE-THREONINE PROTEIN KINASE 328 798 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco02g1907 831 FunFam Serine/threonine-protein kinase isoform 1 540 627 - -
Cco02g1907 831 MobiDBLite consensus disorder prediction 1 29 - -
Cco02g1907 831 MobiDBLite consensus disorder prediction 280 313 - -
Cco02g1907 831 SUPERFAMILY Protein kinase-like (PK-like) 525 797 IPR011009 -
Cco02g1907 831 SMART serkin_6 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1907 831 MobiDBLite consensus disorder prediction 455 469 - -
Cco02g1907 831 MobiDBLite consensus disorder prediction 470 502 - -
Cco02g1907 831 MobiDBLite consensus disorder prediction 1 16 - -
Cco02g1907 831 MobiDBLite consensus disorder prediction 369 426 - -
Cco02g1907 831 Gene3D Transferase(Phosphotransferase) domain 1 628 820 - -
Cco02g1907 831 ProSitePatterns Protein kinases ATP-binding region signature. 555 576 IPR017441 GO:0005524(InterPro)
Cco02g1907 831 MobiDBLite consensus disorder prediction 391 408 - -
Cco02g1907 831 Pfam Protein tyrosine and serine/threonine kinase 551 797 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1907 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 668 680 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1907 831 MobiDBLite consensus disorder prediction 453 507 - -
Cco02g1907 831 CDD STKc_MAP3K-like 555 797 - -
Cco02g1907 831 Gene3D Phosphorylase Kinase; domain 1 542 627 - -
Cco02g1907 831 Pfam Ethylene-responsive protein kinase Le-CTR1 66 261 - -
Cco02g1907 831 ProSiteProfiles Protein kinase domain profile. 549 798 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1907 Cco-Chr2:31947509 Cco03g1687 Cco-Chr3:31590112 6.00E-71 dispersed
Cco02g1907 Cco-Chr2:31947509 Cco10g1925 Cco-Chr10:32842805 4.60E-71 transposed
Cco02g1907 Cco-Chr2:31947509 Cco01g1657 Cco-Chr1:29324585 2.70E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86586 PF07714 PK_Tyr_Ser-Thr 4.80E-59 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1907 - - - 0.0