Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1936 ATGCGAAAATTTAATTCCGTGTGTCAGAGCAAGAAAAAGAAGAGCTGGAAGGGCAGAAGACATCGAATATCCGTCCTGATCCTGAAGCCTTTCTCCTTCCTTCTTTATCTCTTCCCTATAAAGCCGCAGTTTCTGCAGTCACACTTCTTTCCAAGATCATCATCATCATCATCATCATCATCATCATCTGCTTCTTCATCGTCGTCGTCATCTTCATCTTCTTCTTCCTCTTCTTCTTCTTCCTCTTCTTCTTCAGCTGTAATGAAATTCGAAGAGCAGAACCTGAAGCATCAATCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCAGTATTTCGTCGCTACTCGTAATGGAAGCTTCCGAAGACTGCGACAGGGACGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCAATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCGGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAAAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATCCTCATGCTCAAAGAGCTGTATGCTCATCTCTATCTCTGGTTCCTTCCAAGACGAAAGCTCGAAGCTCAGTGGAAAAAGCTTATGCGGTGTAAACTTCGCTGGAGTTCTTCCTCAGTGA 999 44.94 MRKFNSVCQSKKKKSWKGRRHRISVLILKPFSFLLYLFPIKPQFLQSHFFPRSSSSSSSSSSSASSSSSSSSSSSSSSSSSSSSSAVMKFEEQNLKHQSEQMCRTIEVDTIDHHRSISSLLVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESNKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSSSCSKSCMLISISGSFQDESSKLSGKSLCGVNFAGVLPQ 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32245867 32249487 - CcPI632755_02g019360.1 Cco02g1936 172693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1936 332 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 205 245 IPR000387 GO:0016311(InterPro)
Cco02g1936 332 ProSiteProfiles Dual specificity protein phosphatase domain profile. 142 296 IPR020422 GO:0006470(InterPro)
Cco02g1936 332 ProSitePatterns Tyrosine specific protein phosphatases active site. 232 242 IPR016130 GO:0016311(InterPro)
Cco02g1936 332 Pfam Tyrosine phosphatase family 137 289 IPR004861 -
Cco02g1936 332 CDD PFA-DSP_Siw14 136 283 - -
Cco02g1936 332 Gene3D Protein tyrosine phosphatase superfamily 137 286 IPR029021 -
Cco02g1936 332 FunFam probable tyrosine-protein phosphatase At1g05000 136 286 - -
Cco02g1936 332 PRINTS Plant and fungal dual specificity phosphatase signature 137 154 IPR020428 GO:0016791(InterPro)
Cco02g1936 332 PRINTS Plant and fungal dual specificity phosphatase signature 174 187 IPR020428 GO:0016791(InterPro)
Cco02g1936 332 PRINTS Plant and fungal dual specificity phosphatase signature 210 224 IPR020428 GO:0016791(InterPro)
Cco02g1936 332 PRINTS Plant and fungal dual specificity phosphatase signature 193 207 IPR020428 GO:0016791(InterPro)
Cco02g1936 332 MobiDBLite consensus disorder prediction 55 83 - -
Cco02g1936 332 PANTHER TYROSINE-PROTEIN PHOSPHATASE 81 298 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cco02g1936 332 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 138 284 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1073 Cco-Chr3:18766671 Cco02g1936 Cco-Chr2:32245867 2.50E-63 transposed
Cco02g1936 Cco-Chr2:32245867 Cco09g1122 Cco-Chr9:10805440 2.80E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1936 K18045 - csv:101222170 410.609