Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1957 ATGAACAGATCAAGTACCCAATACGATGCTACTGGAGCAAGGGCTGGAGTTCGACGTTCGCAAAAAGCGTTGCTCAAAGAGGGTCAGACCAGACTAAGGAAGCATAGGGTCGTTGACGCCATCGAGCAACAGGGGAAAAGGAGATCAACCACGTTTCCCACATCATCCATTTTCTTCGGACCTTGGCTCAAACTTCAGAGAAACCGAAACCCCGCTCCCTCTCCATTTTCTGATCAAAACCACTCTCGCCGGACCGATCTCTGTCTCTCCGCCGTCCCTCGCGGTCGTCTTCCTCTAGGTTGTCAGAACCCTAGCCTTTTAGGGCGTTCAACGTTGCTCTTTCGTTGCCGTTGCTTCTTTCACTCTGCAATTATCGTCTCTAAGACCTTCTGGCACATATCACTTAATGTTCTAGGAATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACCGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTGTATTACACCAAGTGGTTGAAGGGGAGTGCCTTCCTTTGCTCTCCCTCAGTTCATAGTCCTCTTATTCCTCGGGTGAAGTTTACAGCCGAGGAGCTCCGTCGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCAACACTTACAGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCTGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTATCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTGGCTTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGGGTTTGTCCAGTTCTGCTATGAACCCATCAAGCAGATCATTGCAACTTGCATGAACGATCAGAAGGACAAGCTATGGCCCATGTTGCAGAAGCTTGGAGTTGTCATGAAGTCCGAAGAGAAGGATCTGATGAGTAAAGCATTGATGAAGAGGGTCATGCAAACATGGCTCCCAGCAAGCAATGCTCTTTTGGAAATGATGATCTTTCATCTTCCATCCCCTGCCACGGCTCAAAAGTACCGTGTTGAGAATTTGTACGAGGGTCCACTAGATGATGCTTATGCCAGTGCCATTAGGAATTGTGATCCTGAAGGACCTCTTATGCTTTATGTATCGAAGATGATTCCTGCATCAGACAAGGGCAGGTTCTTTGCCTTTGGACGTGTCTTCTCTGGGAAAGTTTCAACTGGTTTGAAAGTTAGAATTATGGGACCAAACTATGTTCCTGGCGAGAAGAAAGATTTGTATGTGAAGAGTGTCCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACAGTGGAGGATGTGCCTTGTGGTAACACTGTTGCCATGGTTGGATTGGATCAATTCATCACAAAGAATGCTACTCTGACAAACGAGAAGGAAGTTGATGCCCATCCAATTCGAGCCATGAAATTTTCTGTATCTCCTGTGGTGCGTGTGGCTGTTCAGTGCAAGGTGGCATCTGATCTTCCCAAGCTCGTGGAAGGGCTTAAACGTCTGGCAAAGTCAGATCCTATGGTTGTATGTACAATGGAGGAATCTGGTGAGCACATTGTTGCCGGTGCTGGAGAACTACATCTTGAGATCTGTCTGAAGGATTTGCAAGATGACTTCATGGGTGGAGCTGAGATCATAAAATCTGACCCTGTTGTCTCTTTCCGTGAAACTGTCCTTGAGAGGTCATGCCGCACGGTGATGAGTAAATCCCCCAACAAACACAATCGTCTATACATGGAAGCACGACCGATGGAGGAAGGACTGGCAGAAGCTATTGACGATGGCCGCATCGGACCGCGGGATGACCCTAAAGTTAGGTCTAAAATCTTGTCAGAGGAGTTTGGTTGGGACAAAGATCTTGCTAAGAAGATTTGGTGCTTTGGTCCTGAGACTACTGGCCCTAACATGGTGGTTGATATGTGTAAGGGAGTTCAATACCTGAATGAAATCAAGGATTCCGTTGTCGCCGGTTTCCAGTGGGCGTCGAAAGAAGGTGCATTGGCTGAAGAAAACATGAGAGGCATCTGTTTTGAAGTTTGTGATGTGGTGCTTCACGCTGATGCCATCCACAGAGGAGGTGGTCAAGTCATTCCGACCGCTAGGAGGGTAATTTACGCTTCTCAGCTGACCGCCAAACCAAGACTTCTTGAGCCTGTGTACCTAGTGGAGATTCAGGCTCCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTTAACCAGAAGCGTGGGCACGTCTTTGAGGAAATGCAGAGGCCCGGTACCCCTCTTTACAACATCAAGGCGTATCTCCCTGTCATTGAGTCCTTCGGGTTCTCGAGCACATTGAGAGCTGCAACTTCCGGGCAGGCGTTCCCACAGTGTGTTTTCGACCATTGGGACATGATGTCGTCGGATCCATTGGAACCTGGTTCCCAGGCTGCACAGTTAGTCGCAGATATCCGCAAGAGGAAGGGATTGAAGGAACAAATGACTCCGTTGTCTGAGTTTGAGGACAAGCTGTAG 3714 46.82 MNRSSTQYDATGARAGVRRSQKALLKEGQTRLRKHRVVDAIEQQGKRRSTTFPTSSIFFGPWLKLQRNRNPAPSPFSDQNHSRRTDLCLSAVPRGRLPLGCQNPSLLGRSTLLFRCRCFFHSAIIVSKTFWHISLNVLGMSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLKGSAFLCSPSVHSPLIPRVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLQKLGVVMKSEEKDLMSKALMKRVMQTWLPASNALLEMMIFHLPSPATAQKYRVENLYEGPLDDAYASAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTMEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEPGSQAAQLVADIRKRKGLKEQMTPLSEFEDKL 1237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32484601 32498404 + CcPI632755_02g019570.1 Cco02g1957 172714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1957 1237 Gene3D Elongation Factor G (Translational Gtpase), domain 3 880 957 - -
Cco02g1957 1237 CDD EF2_snRNP_III 881 953 - -
Cco02g1957 1237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 735 IPR027417 -
Cco02g1957 1237 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 452 467 IPR031157 -
Cco02g1957 1237 Pfam RNA polymerase Rpc34 subunit 269 377 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cco02g1957 1237 Pfam RNA polymerase Rpc34 subunit 166 266 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cco02g1957 1237 FunFam Translation elongation factor 2 963 1116 - -
Cco02g1957 1237 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 397 1236 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cco02g1957 1237 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 411 738 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 Pfam Elongation factor Tu GTP binding domain 412 615 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 SMART EFG_IV_2 1000 1116 IPR005517 GO:0005525(InterPro)
Cco02g1957 1237 Gene3D - 964 1116 IPR014721 -
Cco02g1957 1237 Pfam Elongation Factor G, domain III 881 943 IPR041095 -
Cco02g1957 1237 SMART EFG_C_a 1118 1207 IPR000640 -
Cco02g1957 1237 Gene3D - 1117 1237 - -
Cco02g1957 1237 PRINTS GTP-binding elongation factor signature 495 505 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 PRINTS GTP-binding elongation factor signature 547 556 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 PRINTS GTP-binding elongation factor signature 511 522 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 PRINTS GTP-binding elongation factor signature 415 428 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 PRINTS GTP-binding elongation factor signature 459 467 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cco02g1957 1237 FunFam Translation elongation factor 2 737 878 - -
Cco02g1957 1237 Pfam Elongation factor Tu domain 2 788 856 IPR004161 GO:0005525(InterPro)
Cco02g1957 1237 Pfam Elongation factor G, domain IV 1004 1116 IPR005517 GO:0005525(InterPro)
Cco02g1957 1237 CDD EF2_II 769 864 - -
Cco02g1957 1237 CDD eEF2_snRNP_like_C 1121 1199 - -
Cco02g1957 1237 Pfam Elongation factor G C-terminus 1118 1204 IPR000640 -
Cco02g1957 1237 MobiDBLite consensus disorder prediction 1 21 - -
Cco02g1957 1237 SUPERFAMILY EF-G C-terminal domain-like 1121 1232 IPR035647 -
Cco02g1957 1237 SUPERFAMILY EF-G C-terminal domain-like 878 954 IPR035647 -
Cco02g1957 1237 SUPERFAMILY Ribosomal protein S5 domain 2-like 956 1120 IPR020568 -
Cco02g1957 1237 NCBIfam small GTP-binding protein domain 414 570 IPR005225 GO:0005525(InterPro)
Cco02g1957 1237 Gene3D Translation factors 737 878 - -
Cco02g1957 1237 Gene3D - 166 229 IPR036388 -
Cco02g1957 1237 FunFam Translation elongation factor 2 1117 1237 - -
Cco02g1957 1237 SUPERFAMILY Translation proteins 736 870 IPR009000 -
Cco02g1957 1237 FunFam Translation elongation factor 2 397 631 - -
Cco02g1957 1237 CDD EF2 414 624 - -
Cco02g1957 1237 Gene3D - 397 631 IPR027417 -
Cco02g1957 1237 FunFam Translation elongation factor 2 880 957 - -
Cco02g1957 1237 CDD aeEF2_snRNP_like_IV 953 1125 - -
Cco02g1957 1237 SUPERFAMILY Winged helix DNA-binding domain 167 228 IPR036390 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1843 Cco-Chr2:31358131 Cco02g1957 Cco-Chr2:32484601 1.10E-167 dispersed
Cco02g1957 Cco-Chr2:32484601 Cco02g1978 Cco-Chr2:32696942 0.00E+00 dispersed
Cco02g1957 Cco-Chr2:32484601 Cco02g1959 Cco-Chr2:32516573 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1957 K03234 - csv:101208886 1652.49