Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1958 ATGGATGCTAATGTACGAGCTCGTTTCACACTCGGCAAACAGTCTTCGCTTAAGCCAGAACGTGAAGGTTCGCCTGTGGTTACCGACGAGCTTGATGATTCGATCGCGATTGATCCTGGGATTAAGCTTATGTACTTGGCCAATGATGGTGACTTGGATGGGATTAGGGAGCTACTGGATTCGGGTACCGACGTGAATTTTCACGACACTGATGGCCGAACCTCTTTGCATGTTGCTGCTTGTCAGGGCCGGCCGGATGTCGTTGAGTTACTACTCGAAAGGGGTGCGGACGTCGACGTTCAGGACCAATGGGGCAGCACGGCTCTTGCAGATGCCATATATTACAAGAATCATGATGTGATCAAACTCTTAGAGAAACACGGTGCAAAGCTACCGATGGCTCCAATGCTCGTACAAAATGCTCGTGAAGTTCCGGAGTACGAGATCAATCCAAATGAGCTTGATTTTTCTAAGAGTGTGAACATTACAAAAGGAACTTTCCGCAGTGCTTCATGGCGTGGAATTCAAGTTGCTGTGAAGACACTAGGCGAGGAAGTTTTCACTGACGAGGATAAAGTGAAGGCATTTAGGGATGAACTTGCTTTACTTCAGAAGATACGGCATCCTAATGTTGTCCAATTTCTGGGAGCTGTAACACAAAGTAGTCCAATGATGATTGTCACAGAGTATTTGCCCCAGGGGGACCTTCATGCATTCTTGAAACGTAAAGGTTCCTTGAAGCTAGCAACAGTCGTAAAGTTTGCTCTTGACATTGCAAGGGGAATGAATTATTTGCATGAGCATAAACCTGAAGCAATAATCCATCGTGATCTTGAACCTTCAAACGTACTGCGGGATGATTCTGGGCACCTGAAAGTCGCAGACTTTGGAGTTAGCAAACTTCTAAAATTTTCGAATAGGGTTAAAGAAGACAGACCTGTGGCTTTGACATGTCAGGACACTTCATGGCGATATGCGGCACCTGAGGTTTATAAAAATGAAGAATATGATACAAAAGTGGATGTATTTTCATTTTCTTTGATCTTGCAAGAGATGATAGAAGGCAATCCACCTTTTCCAACAATGCCAGAAAATGAAGTAGCCAAAGCTTATATAGCTAATGAACGCCCACCATTTACGGCTCCACCAAAGCGTTATGCACTCGGAATACAGGAGCTCATTCAGGAATGTTGGGATGAGAATCCGCATAAAAGACCCACGTTTCGGCAAATAATAAGAAGGTTGGAGGATATTAACACTCGACTCATGCAAACGAGAAGCTTAAAGCCTTATTTACAAGTGAAAGGACTAATCCAGGCAGCAGATCTTCTACCTCGGAAAGCAAATGACATCCACAGACGAGAAATATCCTTCATCTTTATAGTTGATATAATAATGATGCCACAAAAAGACCTGATAAACTTGCAAATCAGGATTATGAAAGCAAAGTCCCAATCGCAAACCCTAGGTGGCGCAAAAGGAAATGCTTCATTGATACCGCATATTCGGCGTCGCCATCACTTCCCACCACCTCTTATCCCTCCTCTCCCGTACTCTGTTTCGCTTCTTGTACTACTCTTTTGTGGAGGCTCAAGGGACAGTCTCTTCCTTTGCTCTCCCTTCATCGTCTCTCTGGTTCTTCTTTCCCTGATACATATGCTTTTTTTCGGCAGTTAA 1677 44.19 MDANVRARFTLGKQSSLKPEREGSPVVTDELDDSIAIDPGIKLMYLANDGDLDGIRELLDSGTDVNFHDTDGRTSLHVAACQGRPDVVELLLERGADVDVQDQWGSTALADAIYYKNHDVIKLLEKHGAKLPMAPMLVQNAREVPEYEINPNELDFSKSVNITKGTFRSASWRGIQVAVKTLGEEVFTDEDKVKAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPQGDLHAFLKRKGSLKLATVVKFALDIARGMNYLHEHKPEAIIHRDLEPSNVLRDDSGHLKVADFGVSKLLKFSNRVKEDRPVALTCQDTSWRYAAPEVYKNEEYDTKVDVFSFSLILQEMIEGNPPFPTMPENEVAKAYIANERPPFTAPPKRYALGIQELIQECWDENPHKRPTFRQIIRRLEDINTRLMQTRSLKPYLQVKGLIQAADLLPRKANDIHRREISFIFIVDIIMMPQKDLINLQIRIMKAKSQSQTLGGAKGNASLIPHIRRRHHFPPPLIPPLPYSVSLLVLLFCGGSRDSLFLCSPFIVSLVLLSLIHMLFFGS 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32505450 32516527 + CcPI632755_02g019580.1 Cco02g1958 172715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1958 558 FunFam serine/threonine-protein kinase STY46-like 149 232 - -
Cco02g1958 558 ProSiteProfiles Ankyrin repeat profile. 71 103 IPR002110 GO:0005515(InterPro)
Cco02g1958 558 SMART ANK_2a 71 100 IPR002110 GO:0005515(InterPro)
Cco02g1958 558 SMART ANK_2a 39 67 IPR002110 GO:0005515(InterPro)
Cco02g1958 558 SMART ANK_2a 104 133 IPR002110 GO:0005515(InterPro)
Cco02g1958 558 SUPERFAMILY Protein kinase-like (PK-like) 163 425 IPR011009 -
Cco02g1958 558 Pfam Protein tyrosine and serine/threonine kinase 161 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1958 558 Gene3D Phosphorylase Kinase; domain 1 148 231 - -
Cco02g1958 558 Pfam Ankyrin repeats (3 copies) 43 130 IPR002110 GO:0005515(InterPro)
Cco02g1958 558 CDD STKc_MAP3K-like 162 415 - -
Cco02g1958 558 SUPERFAMILY Ankyrin repeat 38 131 IPR036770 -
Cco02g1958 558 Gene3D - 33 143 IPR036770 -
Cco02g1958 558 FunFam Integrin-linked protein kinase family 24 147 - -
Cco02g1958 558 ProSiteProfiles Protein kinase domain profile. 98 432 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1958 558 ProSiteProfiles Ankyrin repeat region circular profile. 71 102 - -
Cco02g1958 558 FunFam Os01g0748600 protein 142 434 - -
Cco02g1958 558 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 53 416 IPR051681 GO:0004674(PANTHER)
Cco02g1958 558 Gene3D Transferase(Phosphotransferase) domain 1 232 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1958 Cco-Chr2:32505450 Cco05g2670 Cco-Chr5:34735180 7.60E-70 dispersed
Cco09g1497 Cco-Chr9:20461374 Cco02g1958 Cco-Chr2:32505450 4.00E-88 transposed
Cco02g1958 Cco-Chr2:32505450 Cco03g0718 Cco-Chr3:7372282 6.30E-141 wgd
Cco02g1958 Cco-Chr2:32505450 Cco04g2191 Cco-Chr4:35553621 5.90E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86588 PF07714 PK_Tyr_Ser-Thr 7.30E-59 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1958 - - - 0.0