Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1961 ATGAGTAAACAGAAGGTGTTTCCAACCAATTTAGAGGGGTTCTTCCACCATATATCCTTTCTTCCACTCTCTTCACTAAAATCTAATCTTCCTTTTTTCTTATCTCACCAAGATTTCAGCCACGGAGTTCCCAAATCAAGCTGGAGAAGGATCTGCCTCTTCCCAAAAAAAAATGGGAAGAGAAATGGATTGCTCAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATCGTCTTCTCTACTCGTGGCCGTCTCTATGAATATGCAAATAATAGTGTTAGAGGAACAATTGAGAGGTACAAGAAAGCATTTGCTGACTCTTCCAATTCCGGATTATCAGTTGCGGAAGCTAATGTACAGTTTTACCAACAAGAAGCCTCCAAGCTGAAGAGACAGATTAGGGAAATTCAGAACTCAAACAGGCATATTCTGGGAGAAGCACTCAGCTCATTGTCATTAAAGGACCTCAAAAGTCTGGAGGGCAGATTGGAGAGAGGAATCAGCAAAGTTAGGGCAAAAAAGAACGAAACATTGTGTGCAGAGATGGAATTCATGCAAAAACGGGAAATGGAGCTTCAGAACCACAACAACTATCTGCGAGCACAGATTGCTGAACACGAAAGAATACAACAACAGCAGCAACAACAAACGAACATGATGCAAAGGGCAACATATGAGAGTGTGGGAGGGCAATACGATGAGAATAGAAGTTATGGGGCTGTGGGACTTATGGATTCAGACACTCATTACGCCCATCAAGACCATCTCACTGCCCTTCAGCTTGTTTAA 804 42.04 MSKQKVFPTNLEGFFHHISFLPLSSLKSNLPFFLSHQDFSHGVPKSSWRRICLFPKKNGKRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVRGTIERYKKAFADSSNSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQIAEHERIQQQQQQQTNMMQRATYESVGGQYDENRSYGAVGLMDSDTHYAHQDHLTALQLV 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32534100 32542241 + CcPI632755_02g019610.1 Cco02g1961 172718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1961 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 61 93 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 PANTHER SERUM RESPONSE FACTOR HOMOLOG 60 225 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco02g1961 267 SUPERFAMILY SRF-like 60 109 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 Gene3D - 48 112 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 Pfam K-box region 123 208 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco02g1961 267 Coils Coil 161 181 - -
Cco02g1961 267 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 SMART madsneu2 46 96 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 Coils Coil 117 144 - -
Cco02g1961 267 ProSiteProfiles MADS-box domain profile. 60 97 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco02g1961 267 ProSiteProfiles K-box domain profile. 124 214 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1961 Cco-Chr2:32534100 Cco08g0096 Cco-Chr8:1584628 9.00E-53 dispersed
Cco02g1961 Cco-Chr2:32534100 Cco03g0720 Cco-Chr3:7396523 6.00E-57 wgd
Cco02g1961 Cco-Chr2:32534100 Cco04g2193 Cco-Chr4:35570562 6.70E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58815 PF01486 K-box 3.90E-25 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1961 K09264 - csv:101217987 358.992