Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1964 ATGGATGATCTTGGAGCTTCCATTTCATCGGTCGATTCCGAGTTATTTCGCCGCTTTAATTCTAAAGGGAATTTGAGATTGAGGGGGAGGTGTAGATTTCTAGGTGTCATTGGAATTCTTTGTGTAAAAATAGAAGTGGGGGGTCGATTTGCTTTAGGTTTATTGGGTTTTGGTTTGATGGAGGATTGGGGAAGGTTCATGGAAAAGTGGGCTTCTGCACTTGTGATCCGAATGCAGCAAGATCAAGCCAAGAAGAATTCAACCGAAGTGGAGTTCTTTTCTGATTATGGCGATGCGAGTAGATACAAAATTCAGGAAGTAATCGGGAAAGGAAGCTATGGGGTTGTCTGTTCCGCAATTGACACCCGCACCGGCGACAAGGTTGCAATAAAGAAGATACATAATATTTTTGAGCATATATCTGACGCGGTTAGAATTCTTCGTGAGATAAAGCTGCTTAGACTTCTTCGCCATCCTGATATTGTTGAAATTAAACACATTATGCTGCCACCTTCAAGGAGGGATTTCAAAGATATCTACGTTGTTTTCGAGCTCATGGAATCAGATCTCCACCAAGTTATTAAAGCAAATGATGATCTGACTCGAGAACATTATCAGTTTTTCCTTTACCAACTTCTTCGTGCATTAAAATATATCCATACAGCGAATGTCTACCATCGTGATTTAAAACCGAAGAATATATTAGCAAATGCCAATTGTAAACTTAAAATTTGTGATTTTGGATTAGCAAGAGTTGCCTTCAGTGACACACCAACAACAATTTTCTGGACGGATTATGTTGCTACTAGATGGTACCGAGCTCCAGAGCTGTGTGGTTCATTTTTCTCGAAGTATACACCTGCAATTGATATATGGAGTATTGGCTGCATATTTGCTGAAGTATTAATGGGGAAGCCACTTTTTCCTGGTAAAAACGTTGTCCACCAGCTCGATTTGATGACAGATCTCCTTGGAACTCCTTCATTAGATACAATCTCCAGGGTACGTAATGACAAGGCTAGAAGATATTTAACTACTATGAGGAAAAAGCAGCCGGTACCATTTTCTCAAAAGTTCCCAAATGCAGATCCATTAGCGCTGAGGCTACTAGAAAGACTGCTTGCTTTTGATCCAAAAGATAGACCAACTGCTGAAGAGGCACTGGCTGATCCATACTTCAAGGGATTGGCAAAAATTGAGAGGGAACCTTCCTGCCAGCCAATCACAAAGATGGAATTTGAATTTGAGAGACGGAGGGTCACAAAAGAAGACATTCAAGAGCTAATCTTCCGGGAGATACTAGAATATCATCCTCAGCTACTAAAAGACTACATGAATGGGACGGAGAGAACGAATTTTCTATATCCAAGTGCTGTTGACCAATTTAGAAAGCAGTTTGCGCATCTGGAGGAAAATGGTGGTAAAAGTGCGCCAGTTATTCCTCTTGACAGAAAGCATGTGTCCCTTCCAAGGTCAACAGTTGTACACTCAAACCCGGTCTATTCTAAGGACCAAGTAAATAATGTAACTCTCCAAGATGGGAAGATCTCCGAAGAGGCATACGGCAAGAATTCCCGAGATAGTGAAGGACGGCTAACAAATATATCGAGGGCCATGCAGGCGCCACAAAAAATCCCATTTGCAGCTAAGCCTGGAAGAGTGGTTGGACCGGTTATAGCAGATGAGAATGGGAGGCTGGTGAAGGAACCATACGATCCAAGAACGTTGATCAGAGGTGCCATTCTTCCTCCTGCATATCACTACCACCAAAAACCCGTTGCTGGAAATCAAGAGAGATCTGCAGCAGAAACTAAACTTGATATTTCTTTAAGGGCCGCTAAGCAAGCATCACAGTGTGGCATGGCTTCCAAATTAGGATCAGATATTGCCATCAGCATCGACTCGAACCCCTTTTACATGACACGTGCCGGAGTGAACAAGGTCGAACTCAAGGACCAAATATCCATTGATGCAAACTTTCTTCAGGCCAAGGCTGCCCAATACGGTGGTCTTAGTGCAGCAACAGCCACCGCCACATCGGTTGCTCACAGAAAGATTATAAAAGCCATGGATGAAACAAGAACTCAGAGGAAGGATATGGCCGTCGGCTCGGCTGCTATATGTGTAATAGATGGGCGAGAGAGAGGAATATTAATGGAGAACGAGATTAATATTGTAAATGACGGGGCATCGGGGGACGATCAGACCGCAGAGGATTTTTATGATGTTGACCAGCGGGAGAACGATGCAAAGGTCGCGGAGCTGAACCATAGAATTGAGGTTTTGGAGCGTGAAAAGAAAAAATTGGTTGATGAAAATGAAGAAATCAAAGATAAGATTAAAAGGTTGTCAGCGGAGATTGAAGGGTTGAAGAGTGAAGAGGGGAGGCTGATAGAACAACTGAAAGAAATGGAGAAACAAGTTGAACGTTCTGAAGAGGGAAATAAGGTGGTAGAGTCGGTTGCGGCAAGGGCACTGGAGCTTGAGACTGAAGTCTCGAGGCTACAGCATGATTTGATATCTGCAATGAATGGAGCTGATGAGGCGAATGCCGAAGTTGCGGAGTTGAGGAAAAATTTGGGGGAAAAGGGAGTGAAGGTTGCAGCTCTGGAGGAAGAGTTGGAAGCCCTGAAGAAAGCAAAGGCAGAGAGTGAAAAGAAAGTCAGAGAATTGGAGAGGAAAGTTGGGGTTTTGGAGGTCAAGGAGATAGAGGAGAAGAGTAAAAAAGTTAGGGTAGAGGAGGAAATGAGAGACAAAATTGAGGAGAAAGAGAGGGAAATCACCAGTTTCAAAAAGATTATTGAGAATTTGGAATTGGTGGTAACAAAGAACGGCCTGGAATTAGATAAGTGGATCAAGGAGAAACTTAAGGTGGAAGAGTTGTTGAAGGAGTCAGAGGAGAAAACGAAAATGTTTGAGTCGAAAATGGTTCAGTTGCAGAAGGAAGTAGAGGAAGCACACAAAGTCATTAGTGGATTAAAGGAGAAAGCGGTGAATGCGTTGAATGGAACTGCAGAGGAACTCAAGTCGGCTTTTGAAGGTGCAGAGAAGGAGTTGAACTTGAACTGGCCTATAATTGCAGGTTCAACAGGAGTTGTTGCTGCCGTCGCTGTACTGGCCTTTGTTTTAGTTGTTCATGGTTCCACCATTGATGGAGACAGATCAGCACTCATAAGTTCATGGGTGAAACTCGCAGCTAACTCTTCCTCAAAACAATGGCAGCTAGAGCTAGCACCATTATATATTAGAATTTTCAAGTTGTTAGTTCTAGACGACAGCTCATTTCTTTGTTGCTTCGGTCTTCTTTCTTCTATTGCCTCAACTACTTCCCTGTTAACCCAATTGTGTGGCCTCTGTGGCTTGGTTGAAGAAAACATGAGAAGCAAACAAACTTCTGCTCTTCTTTTCACTTTGCTTGCTGGGTTGCTTTCTCAAAGCCTGCTCATCCCTGTATTCTCCACCTCCATTGCTGACCAGAAAAGCTATTACTCTCCACCAGACCCACATGCTGGAACTCCACCAACAGGTTCACATAGCAGCCCTATCCCACCATCAGGTGGTTATGGAGGAACACCGCCGCATTACTCCACACCAACTCCTTCCACACCGTCAAAGCCTCCATCTGGTGGTGGTGGATACTACAACCCTCCATCTTCAGGTGGCAGTAGCCCACCAACCACCCCTGTAGATCCAGGCACTCCAAGCACTCCAAGCACTCCAAGCACTCCCAGCGTTCCTAGCACACCAAGCACACCAAGCATTCCCACTACTCCATTTACCTGCAATTATTGGCTGAATCATCCAGGAATGATATGGGGAGTATTGGGATGGTGGGGAACATTGGGGAATGCTTTTGGAGCAACCAATGTCCCAGGGTTCGGAACAAATCTCAACTTGCTCCAAGCACTTGCAAACACAAGGACTGATGGGTTTGGAGCCCTTTTAAGAGAAGGCACTGCTTCGTACCTCAACTCTCTTGCTAGTAACAGATTCCCCTTCACAACCAAGCAAGTTAGGACGAGCTTCGTCTCGGCACTCAGCTCCAACAAAGCAGCAGCTGATCAGGCCAACACCTTCAAGTTAGCCAACGAGGGCAAAATTAAACCCAGAGCTTGA 4116 44.39 MDDLGASISSVDSELFRRFNSKGNLRLRGRCRFLGVIGILCVKIEVGGRFALGLLGFGLMEDWGRFMEKWASALVIRMQQDQAKKNSTEVEFFSDYGDASRYKIQEVIGKGSYGVVCSAIDTRTGDKVAIKKIHNIFEHISDAVRILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTREHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLMGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTTMRKKQPVPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKIEREPSCQPITKMEFEFERRRVTKEDIQELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGGKSAPVIPLDRKHVSLPRSTVVHSNPVYSKDQVNNVTLQDGKISEEAYGKNSRDSEGRLTNISRAMQAPQKIPFAAKPGRVVGPVIADENGRLVKEPYDPRTLIRGAILPPAYHYHQKPVAGNQERSAAETKLDISLRAAKQASQCGMASKLGSDIAISIDSNPFYMTRAGVNKVELKDQISIDANFLQAKAAQYGGLSAATATATSVAHRKIIKAMDETRTQRKDMAVGSAAICVIDGRERGILMENEINIVNDGASGDDQTAEDFYDVDQRENDAKVAELNHRIEVLEREKKKLVDENEEIKDKIKRLSAEIEGLKSEEGRLIEQLKEMEKQVERSEEGNKVVESVAARALELETEVSRLQHDLISAMNGADEANAEVAELRKNLGEKGVKVAALEEELEALKKAKAESEKKVRELERKVGVLEVKEIEEKSKKVRVEEEMRDKIEEKEREITSFKKIIENLELVVTKNGLELDKWIKEKLKVEELLKESEEKTKMFESKMVQLQKEVEEAHKVISGLKEKAVNALNGTAEELKSAFEGAEKELNLNWPIIAGSTGVVAAVAVLAFVLVVHGSTIDGDRSALISSWVKLAANSSSKQWQLELAPLYIRIFKLLVLDDSSFLCCFGLLSSIASTTSLLTQLCGLCGLVEENMRSKQTSALLFTLLAGLLSQSLLIPVFSTSIADQKSYYSPPDPHAGTPPTGSHSSPIPPSGGYGGTPPHYSTPTPSTPSKPPSGGGGYYNPPSSGGSSPPTTPVDPGTPSTPSTPSTPSVPSTPSTPSIPTTPFTCNYWLNHPGMIWGVLGWWGTLGNAFGATNVPGFGTNLNLLQALANTRTDGFGALLREGTASYLNSLASNRFPFTTKQVRTSFVSALSSNKAAADQANTFKLANEGKIKPRA 1371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32571013 32582113 - CcPI632755_02g019640.1 Cco02g1964 172721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1964 1371 Pfam Protein kinase domain 102 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1964 1371 PRINTS Tropomyosin signature 871 899 IPR000533 -
Cco02g1964 1371 PRINTS Tropomyosin signature 961 986 IPR000533 -
Cco02g1964 1371 PRINTS Tropomyosin signature 751 768 IPR000533 -
Cco02g1964 1371 PRINTS Tropomyosin signature 902 925 IPR000533 -
Cco02g1964 1371 Coils Coil 998 1018 - -
Cco02g1964 1371 Coils Coil 745 901 - -
Cco02g1964 1371 Coils Coil 903 940 - -
Cco02g1964 1371 ProSitePatterns MAP kinase signature. 137 240 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1964 1371 Gene3D - 741 911 - -
Cco02g1964 1371 FunFam Mitogen-activated protein kinase 188 416 - -
Cco02g1964 1371 Coils Coil 948 996 - -
Cco02g1964 1371 FunFam Mitogen-activated protein kinase 92 195 - -
Cco02g1964 1371 Gene3D Phosphorylase Kinase; domain 1 117 439 - -
Cco02g1964 1371 ProSitePatterns Protein kinases ATP-binding region signature. 108 132 IPR017441 GO:0005524(InterPro)
Cco02g1964 1371 Gene3D Transferase(Phosphotransferase) domain 1 188 416 - -
Cco02g1964 1371 SUPERFAMILY Protein kinase-like (PK-like) 98 397 IPR011009 -
Cco02g1964 1371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 99 434 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco02g1964 1371 CDD STKc_TDY_MAPK 101 438 - -
Cco02g1964 1371 SMART serkin_6 102 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1964 1371 MobiDBLite consensus disorder prediction 1221 1253 - -
Cco02g1964 1371 MobiDBLite consensus disorder prediction 1163 1253 - -
Cco02g1964 1371 ProSiteProfiles Protein kinase domain profile. 102 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1964 Cco-Chr2:32571013 Cco07g1108 Cco-Chr7:24651475 8.10E-206 dispersed
Cco06g0584 Cco-Chr6:6267429 Cco02g1964 Cco-Chr2:32571013 9.10E-212 transposed
Cco09g2431 Cco-Chr9:38535554 Cco02g1964 Cco-Chr2:32571013 3.20E-09 transposed
Cco02g1964 Cco-Chr2:32571013 Cco09g2440 Cco-Chr9:38590643 2.30E-245 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86589 PF00069 Pkinase 7.20E-66 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1964 - - - 0.0