Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1968 ATGGCATCTGGGAGTTCATTGAATGATCATTTATCCAAGAAGACTTCATTTTGGGGCTTGTCATTATGGGTTTTGATCTGCATTTGCATTGGTGCATTTATAGTTTTGATTCTTGGTTTGTTATCTATGTGGATCCTTTTTCGGAAAAAATCTAAGAGATCTGTAGACAAATTCCCTATTACCCAAATACCTAATTTTTCAAAAGATATCAGGATAGATCAGGTTGGGATTCAAATTCCCAATGACCACACTGAAAATAGACTTCTTTCAGTTGATGTCAAAAGAAATGAAGAAAATTCAGAAGTTATGGCTGTGACAAAATCAAGTGAACATGATAACCATAGCCAATGCAGTTCCACTTACCAACATGAAAAAGCTGGCAATTCACAATCAGGGGAAGAAGGAAGCTCTGGAAATGCTAGGAAGCAGGCTTCGAGGTCATATGGAGGATATGGAGGAATTGTGCCACCGTCTCCTCTTGTTGGCTTGCCAGAAATCTCACATCTTGGGTGGGGCCACTGGTTCACTCTCAGGGATCTAGAGCTTGCAACTAATCGCTTTTCTACCGAAAATATTCTTGGGGAAGGGGGATATGGGGTTGTGTATAAGGGCAGACTCATCAATGGCACTGAGGTTGCAGTGAAAAAACTACTCAATAATCTGGGTCAGGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCTATTGGTCACGTTCGGCATAAGAATCTTGTCCGACTGCTGGGTTATTGCATAGAGGGAGTTCATAGGATGCTAGTCTATGAATATGTGAACAATGGCAATCTAGAACAGTGGCTACATGGAGCCATGTGCCAGCATGGCACACTTACTTGGGAGGCTCGCATGAAGGTGCTTCTTGGCACTGCTAAGGCGCTTGCGTATTTACACGAAGCAATTGAGCCAAAAGTTGTTCACAGAGATATAAAATCAAGCAACATTTTGATCGATGACGAGTTCAATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTCTTGGGCTCTGGAGAGAGTCACATCACAACTAGAGTTATGGGAACATTTGGGTATGTGGCACCAGAATATGCAAATACGGGCTTGTTGAATGAAAAGAGTGACATTTATAGCTTCGGTGTTCTCCTGCTAGAAGCAATTACAGGGAGGGACCCTGTGGATTACGCACGTCCTTCTAATGAGGTTAATCTGGTTGAGTGGCTAAAGATGATGGTAGCAACAAGGAGAGCAGAGGAAGTTGTGGACATGAACCTTGAGATCAAGCCAACTACTCGTGCTTTGAAACGTGCCCTTCTTGTTGCACTTAGGTGTATTGATCCTGAATCAATCAAGAGACCCAAGATGAGTCAAGTTGTAAGAATGCTTGAAGCCGACGAATTTCCACTCCACGAGGATAGAAGGAACCGAAAAAGCCGATCGATAAGCTTGGAGATTGAGTCAATGAAAGAAATATCAGGTCCAGAGCAGACGGGTGGGCCGTCCGAGAGCCATAAATCAGAGACAAGCCATGAATAG 1524 43.18 MASGSSLNDHLSKKTSFWGLSLWVLICICIGAFIVLILGLLSMWILFRKKSKRSVDKFPITQIPNFSKDIRIDQVGIQIPNDHTENRLLSVDVKRNEENSEVMAVTKSSEHDNHSQCSSTYQHEKAGNSQSGEEGSSGNARKQASRSYGGYGGIVPPSPLVGLPEISHLGWGHWFTLRDLELATNRFSTENILGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMCQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLGSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYARPSNEVNLVEWLKMMVATRRAEEVVDMNLEIKPTTRALKRALLVALRCIDPESIKRPKMSQVVRMLEADEFPLHEDRRNRKSRSISLEIESMKEISGPEQTGGPSESHKSETSHE 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32629180 32632329 - CcPI632755_02g019680.1 Cco02g1968 172725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1968 507 Coils Coil 207 227 - -
Cco02g1968 507 FunFam Putative receptor-like protein kinase 169 262 - -
Cco02g1968 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g1968 507 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Cco02g1968 507 ProSiteProfiles Protein kinase domain profile. 187 451 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1968 507 Pfam Protein kinase domain 188 456 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1968 507 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Cco02g1968 507 SUPERFAMILY Protein kinase-like (PK-like) 171 463 IPR011009 -
Cco02g1968 507 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524(InterPro)
Cco02g1968 507 MobiDBLite consensus disorder prediction 109 144 - -
Cco02g1968 507 CDD STKc_IRAK 193 459 - -
Cco02g1968 507 FunFam Putative receptor-like serine/threonine-protein kinase 263 473 - -
Cco02g1968 507 MobiDBLite consensus disorder prediction 466 507 - -
Cco02g1968 507 PANTHER OS01G0323000 PROTEIN 6 481 IPR052232 -
Cco02g1968 507 SMART serkin_6 187 441 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g1968 507 MobiDBLite consensus disorder prediction 466 480 - -
Cco02g1968 507 MobiDBLite consensus disorder prediction 100 149 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1968 Cco-Chr2:32629180 Cco06g0424 Cco-Chr6:4647797 3.80E-153 dispersed
Cco03g0685 Cco-Chr3:7081217 Cco02g1968 Cco-Chr2:32629180 2.50E-35 transposed
Cco02g1968 Cco-Chr2:32629180 Cco09g2451 Cco-Chr9:38678000 2.10E-220 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86590 PF00069 Pkinase 1.60E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1968 - - - 0.0