Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1970 ATGGCAGCTTCATCAATGGCTCTCTCCTCCCCATCTCTCGCCGGCCAAGCCGTCAAATTATCCCCCACGACCTCCGACCTCCTCCGCGACGGTCGCATCACCATGAGAAAAACTGCCGGAAAGCCCAAGCCCATTTCCTCCGGAAGCCCATGGTACGGCCCAGATCGCGTCAAATACCTAGGCCCATTCTCTGGCGAGCCCCCTTCTTATTTGAATGGAGAATTCCCCGGCGATTACGGCTGGGACACCGCCGGTTTATCCGCCGACCCGGAAACTTTCGCGAAAAACCGTGAACTGGAAGTGATCCACTCGAGATGGGCCATGCTCGGCGCTCTGGGCTGCGTCTTCCCGGAGCTGCTGTCTCGCAACGGAGTGAAATTCGGCGAAGCCGTGTGGTTCAAGGCTGGGTCTCAAATCTTTAGCGAGGGTGGGCTAGATTATTTGGGGAACCCGAGCCTGGTCCACGCTCAGAGCATTTTAGCCATTTGGGCTTGTCAAGTTGTGCTAATGGGTGCGGTTGAAGGGTATAGAATTGCGGGGGGGCCATTGGGGGAAATCACTGACCCGATTTACCCAGGTGGGAGCTTTGATCCATTGGGGCTTGCTGATGATCCAGAGGCGTTTGCGGAATTGAAAGTGAAGGAACTTAAGAATGGAAGATTGGCTATGTTTTCGATGTTTGGTTTCTTTGTACAGGCGATTGTGACTGGGAAAGGACCTTTGGAGAATTTGGCTGATCATTTGGCCGATCCTGTTAACAATAATGCTTGGGCTTATGCTACTAACTTTGTACCTGGAAAGTGA 804 53.23 MAASSMALSSPSLAGQAVKLSPTTSDLLRDGRITMRKTAGKPKPISSGSPWYGPDRVKYLGPFSGEPPSYLNGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32643188 32643991 - CcPI632755_02g019700.1 Cco02g1970 172727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1970 267 SUPERFAMILY Chlorophyll a-b binding protein 50 264 - -
Cco02g1970 267 Pfam Chlorophyll A-B binding protein 67 234 IPR022796 -
Cco02g1970 267 Gene3D Chlorophyll a/b binding protein domain 58 260 - -
Cco02g1970 267 FunFam Chlorophyll a-b binding protein, chloroplastic 58 260 - -
Cco02g1970 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 267 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1970 Cco-Chr2:32643188 Cco03g0753 Cco-Chr3:7801593 3.40E-145 dispersed
Cco08g0264 Cco-Chr8:4743934 Cco02g1970 Cco-Chr2:32643188 1.10E-56 transposed
Cco10g0603 Cco-Chr10:8051347 Cco02g1970 Cco-Chr2:32643188 1.30E-96 transposed
Cco02g1970 Cco-Chr2:32643188 Cco04g2218 Cco-Chr4:35799355 6.50E-144 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1970 K08912 - csv:101213845 535.798