Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1975 ATGGATGTAGATCGATTGATATCGCAACATATGGAGAAGGTGAGGATGGAAATTGAAGAGAAACGGAAGAGAGAAGCGAGGAGGATTATGGAGGTAATAGAGTTAGGGATGATGAGGATATTGAGGAGTAAAGAGGAAGAGATTGAGAAGATGGGGAAATTGAATTGGGAATTAGAAGAGCGAGTGAATTGTTTGAGTATGGAGAATCAAATATGGAGAGATGTGGCTGAGACGAATGAAGCAACGGCGAATGCGCTAAGGAGTAGCTTGGAACAAGTGCTTTTACAGGCGAAGAAGGCGGAGGTGGAGGAGGATGCAGAGTCGTGGTGTGGAAGCAATGACGGGGGTGGGAAGCGGAAGAAGAGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGACGGTGTAAGAAATGTTGGAAAGAAGAATCGTGCGTGTTGTTATTGCCATGCAGGCATTTGTGTTTGTGTACTGTTTGTGCTTCGTCTTTACAGAATTGTCCTATATGCAACACTACTAATAATGCTAGTGTTCGTGTAATCATGCCTTAA 558 43.37 MDVDRLISQHMEKVRMEIEEKRKREARRIMEVIELGMMRILRSKEEEIEKMGKLNWELEERVNCLSMENQIWRDVAETNEATANALRSSLEQVLLQAKKAEVEEDAESWCGSNDGGGKRKKREEEEEEEEEEEEERRCKKCWKEESCVLLLPCRHLCLCTVCASSLQNCPICNTTNNASVRVIMP 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32675318 32675999 + CcPI632755_02g019750.1 Cco02g1975 172732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1975 185 PIRSF SBP1_RNase_bind 1 185 - -
Cco02g1975 185 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 2 184 - GO:0004842(PANTHER)|GO:0043067(PANTHER)
Cco02g1975 185 FunFam Baculoviral IAP repeat containing 7 147 182 - -
Cco02g1975 185 Pfam Zinc finger, C3HC4 type (RING finger) 135 175 - -
Cco02g1975 185 Coils Coil 117 137 - -
Cco02g1975 185 MobiDBLite consensus disorder prediction 105 129 - -
Cco02g1975 185 Coils Coil 83 103 - -
Cco02g1975 185 Coils Coil 41 61 - -
Cco02g1975 185 CDD mRING-HC-C3HC5_CGRF1-like 142 172 - -
Cco02g1975 185 ProSiteProfiles Zinc finger RING-type profile. 138 173 IPR001841 -
Cco02g1975 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 185 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1975 K19042 - - csv:101213369 257.684
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0973 Cco-Chr1:11444093 Cco02g1975 Cco-Chr2:32675318 1.40E-36 dispersed
Cco02g1975 Cco-Chr2:32675318 Cco09g1300 Cco-Chr9:14390648 1.00E-18 dispersed
Cco02g1975 Cco-Chr2:32675318 Cco09g2457 Cco-Chr9:38730589 1.00E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1009 . . . . . . . . . . . . . . Sed05g1856 Cpe04g00854 . Bhi05g02031 Tan02g0066 Cmetu01g2586 Lac12g0881 Hepe02g0032 . . Cla02g01808 Cam02g1911 Cec02g1931 Cco02g1975 Clacu02g1893 Cmu02g1838 Cre02g2155 . . . . . Csa07g01181 . Cme11g01580 Blo15g00602 . . . . . . Bma12g00622 Sed01g0743 . . . . . . . . Bhi10g00978 Tan05g0620 Cmetu11g1616 . Hepe08g0623 . . . . . . . . . . Csa06g01179 Chy11g01014 Cme01g01539
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001336 2 3 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 5 2 1 75