Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1979 ATGACGAGTGAAATGGAAATGGAAAAGAAAGGATTCATATTCGCCACTGTTTTGCCTAGGTCTTCAGCTTTCTTTGTAATTCCCCATGTCCAATTAAAACTCTCGATTTCTTGTTGCTCCGCTCCCCAACTCTTTTCGCCATTGTTGGAGCTTCAATTTTCAGCCCAAACGCCTAATCGGTTGCCGACAAGGTATGACGCCACCAAGAGACGAAAAGCTGAAGATTATCACATAAAGAACAAGATGACGCAATGCTATCGGTTTCTCTTGCTAGTGGTGTTTGCATGGTTCGTGAAAGGATTGAATGCTAGTGCAGGAGATATTGACCCACAATACAGGACTTGTGTTAAACACTGTGAAGAAATAGGATGCATTGATCAGCAATGCTTTCCTCAGTGCAAATTCTCTTCGGATGGTGTTTCTGTTGATCAGCCTTGGTATATGCAAGAACCACTTTACTTAAGGTGGAAACAATGGGACTGCCAAAGTGATTGCCGTTACCATTGTATGGTTAAACGGGAGAGTGAAAGAGAAGCACTTGGTTATCATCCTGTTAAATATCATGGCAAATGGCCCTTCAAGCGTATGTATGGGATCCAGGAACCTGTTTCTGTAGCATTCTCTGCCCTCAACCTTTCAATGCATTTTCATGGCTGGCTGTCCTTTTTTATCCTTCTATATTACAAGTTACCTTTGAGACAAGACAAGAAGGCATATTATGAATTTGCCAGTTTGTGGCACATCTATGCGCTCTTTTCAATGAACTCTTGGTTTTGGAGTGCTGTTTTCCACAGTCGTGATGTGGATTTGACCGAGAAATTAGATTACTCATCTGCTGTGGCAGTACTTGGGTTTTCACTCATTCTGGCGATTCTAAGAAGTTTCAATGTGAGACATGAGGCTACCAGAGTCATGGTTGCAGCTCCTTTGCTTGCTTTTGCACTTACACATATCTTATACATCAACTTCTACGAACTGGATTATGGCTGGAACATGATTGTTTGTGTTACCATGGGGGTTTCTCAACTTCTAATTTGGGCAATCTGGGCTGGTGTAACTCATCATCCTTCTCGCTGGAAACTGTGGACGGTGGTTGTGGGCGGTGGCTTAGCACTTCTACTGGAAATCTATGATTTTCCACCGTATGAAGGCTTTGTAGATGCTCATGCTCTCTGGCACGCCACTACCATCCCCCTCACCTATCTTTGGTGGAGTTTTATCAGAGATGATGCTGAGTTTCAAACCTCCAATCTTCTCAAGAAATCCAAATAG 1272 42.92 MTSEMEMEKKGFIFATVLPRSSAFFVIPHVQLKLSISCCSAPQLFSPLLELQFSAQTPNRLPTRYDATKRRKAEDYHIKNKMTQCYRFLLLVVFAWFVKGLNASAGDIDPQYRTCVKHCEEIGCIDQQCFPQCKFSSDGVSVDQPWYMQEPLYLRWKQWDCQSDCRYHCMVKRESEREALGYHPVKYHGKWPFKRMYGIQEPVSVAFSALNLSMHFHGWLSFFILLYYKLPLRQDKKAYYEFASLWHIYALFSMNSWFWSAVFHSRDVDLTEKLDYSSAVAVLGFSLILAILRSFNVRHEATRVMVAAPLLAFALTHILYINFYELDYGWNMIVCVTMGVSQLLIWAIWAGVTHHPSRWKLWTVVVGGGLALLLEIYDFPPYEGFVDAHALWHATTIPLTYLWWSFIRDDAEFQTSNLLKKSK 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32701921 32706357 - CcPI632755_02g019790.1 Cco02g1979 172736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1979 423 Pfam Per1-like family 151 411 IPR007217 GO:0006506(InterPro)
Cco02g1979 423 PANTHER PER1-RELATED 84 421 IPR007217 GO:0006506(PANTHER)|GO:0006506(InterPro)|GO:0016788(PANTHER)|GO:0031227(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1979 K23553 - - csv:101218465 710.679
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1979 Cco-Chr2:32701921 Cco05g0937 Cco-Chr5:8181515 6.00E-144 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1012 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01810 Cam02g1914 Cec02g1935 Cco02g1979 Clacu02g1896 Cmu02g1841 Cre02g2158 . . . . . . . Cme11g01583 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g01177 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001566 2 2 2 2 2 2 3 2 2 1 1 2 3 2 2 3 2 4 4 2 2 2 2 2 2 2 2 4 6 2 71