Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1983 ATGCCTTGTTATCTAACTTCCCGAGCCAAACATCCTCCAATTGGGAGAAATGAAAGGAGGACAGCAGCTGCAATTTCAGCCTCCTTTAGGTTTTGTCTCAGACCCAAATCCCAACAAGAGTTTAAACCATTCCAGATCTCCTTAACTGTTGACTCTCTCCTGTTGGACAGTGAATTAAGGCTTCAGTTAGATAGCCAAAGTGATTCTAGCTTTGCCACTTCTGACATTGTAAGGAATGCCCGTCAACAGGTCCTTGACTATTTCAAAGCATCTCCTAAAGACTACAAATGCATATTTACTTCTGGTGCAACAGCAGCACTAAAATTAGTTGGTGAAGCCTTCCCGTGGAGTCATCAGAGCAGCTTTGTGTACACAATGGAGAATCACAACAGCGTTCTTGGAATCAGAGAATATGCTCTTGAACAAGGAGCTCAAGCCTATGCCATAGATATTGAAGATGCAGAACATGATGCATTCACAGGAAATCTTGCATCACTGCAAGCAACAAAGCACCAAATACTAAGGAGAAATGAAGCCAAGTTTCTGGATAAAGATCATACAGGCAGTGCATATAACTTGTTTGCCTTCCCTTCAGAGTGCAATTTCTCTGGTTCGATATTTAGCCTTGAATTGGTGAAGATTGTTAAAGAAGATTCAATTAGATATTCTGATGGCTCTCCATCTTTTAATGGACGCTGGAAAGTTTTGATCGATGCTGCAAAAGGATGTGCCACAGAACCCCCAGATTTATCCAAGTATCCTGCTGATTTTGTTGTTATCTCTTTCTATAAGCTGTTTGGGTATCCAACTGGACTTGGAGCTCTCATAGTTCATACGGATGCTGCCAAGTTATTGAAGAGAACATACTTCAGTGGAGGCACCGTTGCTGCTTCAATTGCTGATATTGACTATGTCAAACGGAGAGAGGGCATTGAGGAGCTCTTTGAAGATGGTACAATCTCATTCCTGAGCATCGCCTCTCTATGCCATGGGTTCAAAGTTCTAAATTCTCTAACTATACCTGCAATATCTCGGCATACTTCATCACTTGCCACATATTTGAGGAACATCCTTGTGGCCCTGAGGCATGCAAATGGAACAAGCGTATGCACCCTCTATGGAAGTTGCTCTTCCAAGACACTATGTTACAAAATGGGTCCGGTAGTCTCATTCAACTTGAGGCAACCAGATGGATCCTGGGTTGGACATCGAGAAGTGGAAAAGCTGGCCTCTCTGTCTGGGATTCAGTTAAGGACAGGATGTTTTTGTAATCCTGGTGCATGTGCAAAATATCTTGGTCTATCTCATTTGGATTTTGCTACAAATATTGAGGCAGGCCATATCTGCTGGGATGATAATGATATAATTAATGGAAAACCAACTGGTGCTGTGAGAGTATCCTTGGGATACATGTCAACTTATGAAGATGTCAAGAAATTCGTTGATTTTGTGGCAACTTCCTTTGTCTCTACTCGAACTCATGCTGGACATGGATTAGAATTTTGCGGAAGGTCCATCCATTTCACCGACATAGGTTTTAAGAACAGATATTCAGCTTCTCGATTTGACCTCAAGTCTATTACTGTTTATCCAATCAAATCATGTGCAGGATTCAGCATGGATAGATGGCCGTTAAGTAGTCGAGGGCTTCTTCATGATCGGGAGTGGCTTCTTCAAAGCCTGACGGGTGAAACTCTTACACAGAAGAAGGTTCCTGAAATGTCACTTGTACGTACTTATATTGACCTCAGTCAGGGAATATTGTTTATTGACTCCCCACGTTGCAAAGAGAGACTGCAGATCACCCTGAATTCAAATCCTTTCAATGGCAAGAGAGAAGAAATAAGTCTGCATGGTCAGATATATCAAGTCCAGGGTTACGACAAAGAAGTTGATACTTGGTTTAGTGCAGCTATTGGTCGACCATGTACTTTGTTGCGGCATATAAATTCCAGTCATTGTGCCAGCTTGTGTGAGAGAGATGGTGTTGGTACCTGTAGAGAATCACGAAATCACTTGAATTTTCCCAATGAAGCACAGTTCTTGCTGGTATCTGAGGAGAGTGTATCAGACCTCAATAACAGATTGAATTCAAATGTTGGAAAGGACGTTCGTAGAACATCACTTCAAGTTAATCCTATGAGGTTCCGGCCAAATCTTGTCATATCTGGAGGCAGACCTTATGCTGAAGATGAGTGGAGAAATATTAAAATTGGCAACAAGTACTTCAGATCGTTAGGTGGATGCAACCGTTGCCAGATGATCAATTTTGTTATTGATGCTGAACAAGTCCGGAAGACAAATGAACCTTTAGCTACTTTAGCATCATACCGGAGGGTGAAGGGGAAAATTTTGTTTGGGGTACTGTTGAGATATGAATGTGAGGCTGAAGAAGGGAAGACTGGTGACTTATGGCTTCAGGTTGGAGAAAGTATAATCCCTGATTCCGAATAG 2454 42.01 MPCYLTSRAKHPPIGRNERRTAAAISASFRFCLRPKSQQEFKPFQISLTVDSLLLDSELRLQLDSQSDSSFATSDIVRNARQQVLDYFKASPKDYKCIFTSGATAALKLVGEAFPWSHQSSFVYTMENHNSVLGIREYALEQGAQAYAIDIEDAEHDAFTGNLASLQATKHQILRRNEAKFLDKDHTGSAYNLFAFPSECNFSGSIFSLELVKIVKEDSIRYSDGSPSFNGRWKVLIDAAKGCATEPPDLSKYPADFVVISFYKLFGYPTGLGALIVHTDAAKLLKRTYFSGGTVAASIADIDYVKRREGIEELFEDGTISFLSIASLCHGFKVLNSLTIPAISRHTSSLATYLRNILVALRHANGTSVCTLYGSCSSKTLCYKMGPVVSFNLRQPDGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHLDFATNIEAGHICWDDNDIINGKPTGAVRVSLGYMSTYEDVKKFVDFVATSFVSTRTHAGHGLEFCGRSIHFTDIGFKNRYSASRFDLKSITVYPIKSCAGFSMDRWPLSSRGLLHDREWLLQSLTGETLTQKKVPEMSLVRTYIDLSQGILFIDSPRCKERLQITLNSNPFNGKREEISLHGQIYQVQGYDKEVDTWFSAAIGRPCTLLRHINSSHCASLCERDGVGTCRESRNHLNFPNEAQFLLVSEESVSDLNNRLNSNVGKDVRRTSLQVNPMRFRPNLVISGGRPYAEDEWRNIKIGNKYFRSLGGCNRCQMINFVIDAEQVRKTNEPLATLASYRRVKGKILFGVLLRYECEAEEGKTGDLWLQVGESIIPDSE 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32748541 32769566 - CcPI632755_02g019830.1 Cco02g1983 172740

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1983 817 SUPERFAMILY MOSC N-terminal domain-like 524 649 - -
Cco02g1983 817 Pfam Aminotransferase class-V 234 480 IPR000192 -
Cco02g1983 817 Pfam Aminotransferase class-V 65 153 IPR000192 -
Cco02g1983 817 Gene3D Aspartate Aminotransferase, domain 1 334 490 IPR015422 -
Cco02g1983 817 SUPERFAMILY PK beta-barrel domain-like 525 774 IPR011037 -
Cco02g1983 817 Pfam MOSC domain 673 812 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
Cco02g1983 817 Gene3D - 59 333 IPR015421 -
Cco02g1983 817 SUPERFAMILY PLP-dependent transferases 65 485 IPR015424 -
Cco02g1983 817 Pfam MOSC N-terminal beta barrel domain 523 641 IPR005303 -
Cco02g1983 817 Hamap Molybdenum cofactor sulfurase [MOCOS]. 28 814 IPR028886 GO:0006777(InterPro)|GO:0008265(InterPro)
Cco02g1983 817 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 57 489 - -
Cco02g1983 817 ProSiteProfiles MOSC domain profile. 655 815 IPR005302 GO:0003824(InterPro)|GO:0030151(InterPro)|GO:0030170(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1983 K15631 - - csv:101220625 1382.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1040 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01813 Cam02g1918 Cec02g1939 Cco02g1983 Clacu02g1900 Cmu02g1847 Cre02g2162 . . . . . . . . Blo15g00605 . . . . . . Bma12g00598 Sed14g1679 . . . . . . . . Bhi10g00965 Tan05g0609 Cmetu11g0122 . . . . . . . . . . . . Csa06g01170 Chy11g01023 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005491 1 7 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 39