Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1984 ATGAAGGAGATCAGTGGAAGAAAACAAGGCATATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTTCCAGAGCAGCAACGAAGTGATGCAGTTAGTTCGATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGGCAATTCCCGTCATCCTCCTGCAACCCGACTGCGGGCCACTCACCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.34 MKEISGRKQGISLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32785538 32787700 + CcPI632755_02g019840.1 Cco02g1984 172741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1984 173 Coils Coil 94 114 - -
Cco02g1984 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cco02g1984 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
Cco02g1984 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cco02g1984 173 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1984 Cco-Chr2:32785538 Cco07g0478 Cco-Chr7:5715761 2.60E-45 dispersed
Cco01g0954 Cco-Chr1:10903808 Cco02g1984 Cco-Chr2:32785538 2.70E-58 transposed
Cco02g1105 Cco-Chr2:15622562 Cco02g1984 Cco-Chr2:32785538 4.90E-18 transposed
Cco02g1504 Cco-Chr2:27627675 Cco02g1984 Cco-Chr2:32785538 1.80E-33 transposed
Cco02g2238 Cco-Chr2:34988973 Cco02g1984 Cco-Chr2:32785538 1.80E-34 transposed
Cco09g2239 Cco-Chr9:36681243 Cco02g1984 Cco-Chr2:32785538 3.10E-29 transposed
Cco02g1984 Cco-Chr2:32785538 Cco09g2460 Cco-Chr9:38769630 4.10E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58820 PF03195 LOB 1.00E-43 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1984 - - - 0.0