Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g1984 | ATGAAGGAGATCAGTGGAAGAAAACAAGGCATATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTTCCAGAGCAGCAACGAAGTGATGCAGTTAGTTCGATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGGCAATTCCCGTCATCCTCCTGCAACCCGACTGCGGGCCACTCACCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG | 522 | 51.34 | MKEISGRKQGISLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC | 173 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 32785538 | 32787700 | + | CcPI632755_02g019840.1 | Cco02g1984 | 172741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g1984 | 173 | Coils | Coil | 94 | 114 | - | - | |
Cco02g1984 | 173 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
Cco02g1984 | 173 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 14 | 134 | - | - | |
Cco02g1984 | 173 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
Cco02g1984 | 173 | MobiDBLite | consensus disorder prediction | 124 | 148 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1984 | Cco-Chr2:32785538 | Cco07g0478 | Cco-Chr7:5715761 | 2.60E-45 | dispersed | |
Cco01g0954 | Cco-Chr1:10903808 | Cco02g1984 | Cco-Chr2:32785538 | 2.70E-58 | transposed | |
Cco02g1105 | Cco-Chr2:15622562 | Cco02g1984 | Cco-Chr2:32785538 | 4.90E-18 | transposed | |
Cco02g1504 | Cco-Chr2:27627675 | Cco02g1984 | Cco-Chr2:32785538 | 1.80E-33 | transposed | |
Cco02g2238 | Cco-Chr2:34988973 | Cco02g1984 | Cco-Chr2:32785538 | 1.80E-34 | transposed | |
Cco09g2239 | Cco-Chr9:36681243 | Cco02g1984 | Cco-Chr2:32785538 | 3.10E-29 | transposed | |
Cco02g1984 | Cco-Chr2:32785538 | Cco09g2460 | Cco-Chr9:38769630 | 4.10E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58820 | PF03195 | LOB | 1.00E-43 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g1984 | - | - | - | 0.0 |