Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1987 ATGTTTCTCGCAGGAAAGGTCGAAGAAACCCCTCGCCCGTTGAAGGATGTTATCATGGTCTCATATGAAATCATCAACAAAAAGGATCCTACTGCAGCCCAGAAAATTAGGCAAAAGGAGGTGTATGAACGGCAAAAAGAGTTAATTTTACTTGGGGAGAGAGTTGTTCTCGCAACTCTTGGTTTTGATCTTAATGTGCACCATCCCTACAAACCCCTTGTCGAGGCAATTAAAAAATTCAAAGTTGCTCAAAATGCCTTGGCTCAGGTAGCTTGGAATTTCGTCAATGATGGATTGCGGACATCTCTTTGCTTGCAATTTAAGCCTCACCATATTGCGGCCGGTGCCATTTTCCTTGCTGCCAAATTTCTCAAAGTTAAACTCCCATCAGATGGGGAAAAGGTGTGGTGGCAAGAGTTTGATGTCACCCCACGGCAATTGGAGGAAGTCAGCAATCAAATGTTAGAACTTTATGAACAAAATCGATTGCCGCCTTCTGGCGAAGCTGATGGAAGCATTGGAGGTGGTCCCACTAATCAAACCCCTACAAAAGCTCCTACCAACAGTGAAGAACGTGCCATAGCAGACAATCATGCACTTGGTGCAGGTGACCAGCCATCAAGAGCAATGCAGAATCATAGTATTGAAAGTTCGAGCGTAGATTTTAGAAGTCCTTCCAATCACAAAACAGATTTTAGAGAAGGTACACTTGGCAAATCTCAGGACGTTATCAAAAAAATTGATAAGGACAAAGTAAAGGCTGCGCTTGAGAAACGAAGGAAGTCTCTTGGCAGCATGACCCAGAAAAAAGAATTGATGGATGAGGATGATCTCATTGAAAGGGAGTTGGAAGCTGGTGTTGAGATGGCTGTTGGCAGTGAGAAAAACAAGCGAGAACAGAGGCAAAGTTGGAATAAGTCATCGAATAAACAAGAATATGAGGATTCATATCAAGACAAACATCGAGAGGACGATAAAGACGAGCATCCTCAACGAACGCGACAGTCATCATCATATAATCTAGATTCTAGCAACATAGAAGAAGGGGAGTTTGCAAATGCTAATGAAGTAGGTTATGGGTATCAAGATTCCCCAAAGTCGAACAGTCGTAAGAGAGGCAGGGAACTCACAGGATAA 1137 43.01 MFLAGKVEETPRPLKDVIMVSYEIINKKDPTAAQKIRQKEVYERQKELILLGERVVLATLGFDLNVHHPYKPLVEAIKKFKVAQNALAQVAWNFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNRLPPSGEADGSIGGGPTNQTPTKAPTNSEERAIADNHALGAGDQPSRAMQNHSIESSSVDFRSPSNHKTDFREGTLGKSQDVIKKIDKDKVKAALEKRRKSLGSMTQKKELMDEDDLIERELEAGVEMAVGSEKNKREQRQSWNKSSNKQEYEDSYQDKHREDDKDEHPQRTRQSSSYNLDSSNIEEGEFANANEVGYGYQDSPKSNSRKRGRELTG 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32813680 32815980 - CcPI632755_02g019870.1 Cco02g1987 172744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1987 378 Gene3D - 1 64 - -
Cco02g1987 378 SMART cyclin_7 71 156 IPR013763 -
Cco02g1987 378 MobiDBLite consensus disorder prediction 173 190 - -
Cco02g1987 378 MobiDBLite consensus disorder prediction 207 225 - -
Cco02g1987 378 SUPERFAMILY Cyclin-like 67 163 IPR036915 -
Cco02g1987 378 SUPERFAMILY Cyclin-like 1 66 IPR036915 -
Cco02g1987 378 MobiDBLite consensus disorder prediction 289 305 - -
Cco02g1987 378 CDD CYCLIN_AcCycT_rpt2 67 159 - -
Cco02g1987 378 MobiDBLite consensus disorder prediction 312 333 - -
Cco02g1987 378 MobiDBLite consensus disorder prediction 289 378 - -
Cco02g1987 378 Gene3D - 66 166 - -
Cco02g1987 378 FunFam Cyclin-T1-5 like 66 170 - -
Cco02g1987 378 MobiDBLite consensus disorder prediction 162 237 - -
Cco02g1987 378 Pfam Cyclin-T2-like, C-terminal domain 69 156 - -
Cco02g1987 378 PANTHER CYCLIN 1 265 IPR043198 GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0006357(InterPro)|GO:0008024(PANTHER)|GO:0016538(InterPro)|GO:0016538(PANTHER)|GO:0032786(PANTHER)|GO:0061575(PANTHER)
Cco02g1987 378 MobiDBLite consensus disorder prediction 334 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0951 Cco-Chr1:10801997 Cco02g1987 Cco-Chr2:32813680 4.10E-108 dispersed
Cco02g1987 Cco-Chr2:32813680 Cco08g1666 Cco-Chr8:28128409 1.10E-56 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1987 K15188 - csv:101220862 555.829