Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g1990 ATGCCTATGGCTACTGCACCCTTGAACAAAATTGAGCGAGCCCATCAGATGTACCGTGAAGGGCTTTATGTCGAAGCCCTGAGATTTTACACTGAAGCTCTTGCCATGGCCAAAACCAAGTCCCAGAGGATTGCGCTTCATAGTAACAGAGCTGCTTGCCATTTGAAACTTCATGATTTCAAGAAGGCAGCGGAAGAATGTACATGGGTTCTTGAACTTGATCACAAGCACACTGGAGCTCTAATGCTTCGTGCCCAGACTCTTGTCACACTCAAGGAATACCATTCTGCTCTCTTTGATGTTAACAGACTTATAGAATTGAACCCATCATCAGAAGTTTATCAGAATCTTCACACTCGACTCAAGACGCAATTGTCCCTTGCTCCAATACCTGAATCAGAAGTAGAGCTTGAAGAAGAGGAGGAAGAAGAAGAATGCGCTGTCGAGTTCAGTGCATATGCTGCCAATGAGAAGTGCAATGAGGGAAAAGAAAATGTTGTCGCTCCGAGTATTGCGCAGGTACAGAAACCTGAGCATAATTGCAATTTGATTGAAAAGAACATTATCCAGACTACTCAGGGCAACTGTGGATTATCTGAAGAAGAAAGGGGTAATCAGAAAGTTGAGGTGAAAATGAATACTAAAAGTGAAGTTGTTGCTCCTCAAGCACAAAGCAAGAAGGGCACAACTGACCTAGGTCCCAATGGCTGGCAAACAATCCCAAAACCAAAAGGTCACTCAGCTTTAGACTATGCACGTTGGGATAGAGTTGAGGATGATTCTAGTGAAGATGATGATGACGATGAAGAAGAAGACTCAGGACCTCAATTCCGTTTTCGTGTTAGAACTAAAAATGACACAACGAGCAACTCCGAGCCTCGTGTATTTTGGAAATTCATATGTAAAAAATCAGTACTGTTGAGACCTTCAGACCTATGTGAAGTGTATTTGGTTACATTCAAAACTAGCACTGTGGATCTGATCGACGAGCAAGCTTTGCACATAAGATTTTATACAGAGCTCCAGCTGATGCTGTTTGGTTTGAGTAATCTGTCTGCTGCACAATATCAATTTCCGGGTGGTTATCACAAATGGAGATCCTGTCTTGGATTATGGATAATAGTTCTGTCCAGCAATTACTCGACTCTTCGCAATTGTCCCACAATTCTTTCTCTGCTCTTTAGCCGCTTTATAAAAGGATATGCATATGGAGAATTTATCATCTAG 1227 42.22 MPMATAPLNKIERAHQMYREGLYVEALRFYTEALAMAKTKSQRIALHSNRAACHLKLHDFKKAAEECTWVLELDHKHTGALMLRAQTLVTLKEYHSALFDVNRLIELNPSSEVYQNLHTRLKTQLSLAPIPESEVELEEEEEEEECAVEFSAYAANEKCNEGKENVVAPSIAQVQKPEHNCNLIEKNIIQTTQGNCGLSEEERGNQKVEVKMNTKSEVVAPQAQSKKGTTDLGPNGWQTIPKPKGHSALDYARWDRVEDDSSEDDDDDEEEDSGPQFRFRVRTKNDTTSNSEPRVFWKFICKKSVLLRPSDLCEVYLVTFKTSTVDLIDEQALHIRFYTELQLMLFGLSNLSAAQYQFPGGYHKWRSCLGLWIIVLSSNYSTLRNCPTILSLLFSRFIKGYAYGEFII 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 32827622 32834217 - CcPI632755_02g019900.1 Cco02g1990 172747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g1990 408 Gene3D Tetratricopeptide repeat domain 9 151 IPR011990 GO:0005515(InterPro)
Cco02g1990 408 SMART tpr_5 44 77 IPR019734 GO:0005515(InterPro)
Cco02g1990 408 SMART tpr_5 78 111 IPR019734 GO:0005515(InterPro)
Cco02g1990 408 SMART tpr_5 7 40 IPR019734 GO:0005515(InterPro)
Cco02g1990 408 SUPERFAMILY TPR-like 11 120 IPR011990 GO:0005515(InterPro)
Cco02g1990 408 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 283 - -
Cco02g1990 408 MobiDBLite consensus disorder prediction 217 236 - -
Cco02g1990 408 MobiDBLite consensus disorder prediction 214 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g1990 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1088 . . . . Bpe07g00463 . . . . . . . . . . . Cpe16g00716 . . . . . . . Cla02g01818 Cam02g1924 Cec02g1950 Cco02g1990 Clacu02g1905 Cmu02g1853 Cre02g2168 . . . . . . . Cme11g01602 Blo15g00613 . . . . . . Bma12g00591 Sed01g0755 . . . . . . . . Bhi10g00956 Tan05g0601 Cmetu11g1730 . Hepe08g0634 . . . . . . . . . . Csa06g01163 Chy11g01028 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010489 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 0 1 2 1 1 32